Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c01160

Experiment: m.b. Gentamicin 0.002 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	m.b. Gentamicin 0.002 mg/ml
108,324	+				-0.6
108,338	+				+0.1
108,350	+				+0.8
108,350	+				-1.0
108,350	+				-1.0
108,350	+				-1.9
108,350	+				-1.6
108,350	+				-0.5
108,350	+				-0.1
108,358	-				-0.7
108,358	-				-2.4
108,358	-				-0.6
108,358	-				+0.1
108,360	+				+0.2
108,360	+				-1.2
108,360	+				-0.7
108,368	-				-1.9
108,368	-				-0.0
108,368	-				-0.9
108,479	+				-0.2
108,480	+				-0.8
108,488	-				-1.4
108,498	-				-2.1
108,527	+				-1.6
108,548	-				+0.1
108,564	+				-0.7
108,564	+				-1.9
108,564	+				-1.3
108,564	+				-0.3
108,567	-				-1.5
108,572	-				-2.0
108,572	-				-3.1
108,572	-				+0.5
108,572	-				-2.6
108,572	-				-1.3
108,575	+				-1.4
108,583	-				+0.0
108,583	-				-0.3
108,583	-				-1.7
108,583	-				-1.7
108,601	-				-1.5
108,616	-				-2.8
108,639	+				-1.1
108,639	+				-3.3
108,639	+				-1.1
108,639	+				-1.2
108,639	-				-2.6
108,641	-				-0.6
108,647	+				+0.6
108,647	-				-0.3
108,647	-				-1.8
108,647	-				-2.2
108,647	-				-1.3
108,647	-				-1.3
108,647	-				-2.6
108,654	-		PGA1_c01150	0.10	-2.4
108,654	-		PGA1_c01150	0.10	-2.5
108,655	-		PGA1_c01150	0.11	-3.1
108,655	-		PGA1_c01150	0.11	-0.4
108,662	+		PGA1_c01150	0.12	-0.7
108,662	-		PGA1_c01150	0.12	-1.2
108,662	-		PGA1_c01150	0.12	-3.3
108,678	-		PGA1_c01150	0.14	-1.3
108,689	+		PGA1_c01150	0.15	-1.6
108,689	+		PGA1_c01150	0.15	-2.2
108,726	-		PGA1_c01150	0.21	-1.5
108,759	+		PGA1_c01150	0.25	-1.1
108,759	+		PGA1_c01150	0.25	-2.0
108,767	-		PGA1_c01150	0.26	-1.4
108,767	-		PGA1_c01150	0.26	-1.5
108,767	-		PGA1_c01150	0.26	-0.9
108,767	-		PGA1_c01150	0.26	-0.5
108,825	-		PGA1_c01150	0.35	-1.5
108,842	+		PGA1_c01150	0.37	-1.8
108,842	+		PGA1_c01150	0.37	-2.1
108,850	-		PGA1_c01150	0.38	-2.3
108,853	+		PGA1_c01150	0.39	-2.4
108,853	+		PGA1_c01150	0.39	-1.7
108,853	+		PGA1_c01150	0.39	+1.2
108,861	-		PGA1_c01150	0.40	-3.6
108,864	-		PGA1_c01150	0.40	-4.1
108,871	-		PGA1_c01150	0.41	-0.7
108,906	-		PGA1_c01150	0.46	-1.4
108,906	-		PGA1_c01150	0.46	-0.5
108,921	-		PGA1_c01150	0.48	-1.9
109,032	+		PGA1_c01150	0.64	-1.6
109,032	+		PGA1_c01150	0.64	-0.2
109,032	+		PGA1_c01150	0.64	-1.2
109,032	+		PGA1_c01150	0.64	-2.7
109,040	-		PGA1_c01150	0.65	-1.3
109,040	-		PGA1_c01150	0.65	-1.6
109,040	-		PGA1_c01150	0.65	-0.3
109,048	-		PGA1_c01150	0.67	-3.1
109,049	-		PGA1_c01150	0.67	+0.0
109,090	+		PGA1_c01150	0.73	-1.8
109,124	-		PGA1_c01150	0.77	-0.3
109,124	-		PGA1_c01150	0.77	-2.2
109,148	+		PGA1_c01150	0.81	-1.7
109,153	+		PGA1_c01150	0.81	-1.2
109,153	+		PGA1_c01150	0.81	+1.3
109,153	+		PGA1_c01150	0.81	-1.0
109,153	+		PGA1_c01150	0.81	-3.1
109,153	+		PGA1_c01150	0.81	+0.2
109,153	+		PGA1_c01150	0.81	-0.6
109,153	+		PGA1_c01150	0.81	-0.7
109,153	+		PGA1_c01150	0.81	-2.7
109,153	+		PGA1_c01150	0.81	-1.7
109,153	+		PGA1_c01150	0.81	-1.9
109,153	+		PGA1_c01150	0.81	-3.3
109,153	+		PGA1_c01150	0.81	-2.1
109,156	-		PGA1_c01150	0.82	-0.8
109,156	-		PGA1_c01150	0.82	+0.6
109,161	-		PGA1_c01150	0.83	-0.9
109,161	-		PGA1_c01150	0.83	-2.6
109,161	-		PGA1_c01150	0.83	-0.1
109,161	-		PGA1_c01150	0.83	+1.4
109,161	-		PGA1_c01150	0.83	-1.5
109,161	-		PGA1_c01150	0.83	-1.2
109,161	-		PGA1_c01150	0.83	-2.6
109,161	-		PGA1_c01150	0.83	+1.2
109,161	-		PGA1_c01150	0.83	-1.7
109,161	-		PGA1_c01150	0.83	-0.9
109,161	-		PGA1_c01150	0.83	-2.6
109,161	-		PGA1_c01150	0.83	-2.5
109,161	-		PGA1_c01150	0.83	-1.7
109,161	-		PGA1_c01150	0.83	-1.9
109,166	-		PGA1_c01150	0.83	-1.1
109,166	-		PGA1_c01150	0.83	-1.2
109,173	+		PGA1_c01150	0.84	-1.7
109,194	-		PGA1_c01150	0.87	-1.6
109,256	+				-1.1
109,289	+				-0.1
109,291	-				-0.6
109,303	+				+0.9
109,343	-				-1.9
109,343	-				-1.8
109,361	+				-1.2
109,361	+				-1.1
109,380	-				-0.5
109,383	+				-0.2
109,401	+				+0.2
109,409	-				-1.4
109,409	-				-1.8
109,414	+				+0.4
109,466	+				-0.6
109,478	+				-2.6
109,479	+				-0.7
109,479	-				-1.1
109,483	+				-1.2
109,487	-				-1.7
109,498	+		PGA1_c01160	0.11	-0.3
109,498	+		PGA1_c01160	0.11	-1.1
109,553	-		PGA1_c01160	0.14	-1.2
109,553	-		PGA1_c01160	0.14	-0.8
109,593	+		PGA1_c01160	0.16	-1.5
109,701	+		PGA1_c01160	0.22	-2.8
109,704	-		PGA1_c01160	0.23	-0.4
109,709	-		PGA1_c01160	0.23	+0.2
109,709	-		PGA1_c01160	0.23	-0.6
109,734	-		PGA1_c01160	0.24	-0.8
109,747	+		PGA1_c01160	0.25	-1.1
109,747	+		PGA1_c01160	0.25	-2.2
109,747	+		PGA1_c01160	0.25	-4.6
109,747	+		PGA1_c01160	0.25	-3.6
109,747	+		PGA1_c01160	0.25	-1.5
109,747	+		PGA1_c01160	0.25	-2.4
109,747	+		PGA1_c01160	0.25	-2.0
109,747	+		PGA1_c01160	0.25	+0.4
109,747	+		PGA1_c01160	0.25	-2.5
109,747	+		PGA1_c01160	0.25	+0.8
109,747	+		PGA1_c01160	0.25	-0.6
109,755	-		PGA1_c01160	0.26	-0.3
109,755	-		PGA1_c01160	0.26	-0.3
109,755	-		PGA1_c01160	0.26	-2.1
109,755	-		PGA1_c01160	0.26	-1.2
109,755	-		PGA1_c01160	0.26	-2.1
109,755	-		PGA1_c01160	0.26	-0.6
109,755	-		PGA1_c01160	0.26	-2.0
109,755	-		PGA1_c01160	0.26	+0.2
109,755	-		PGA1_c01160	0.26	-0.4
109,775	-		PGA1_c01160	0.27	-1.6
109,821	-		PGA1_c01160	0.29	-2.3
109,842	-		PGA1_c01160	0.31	-1.3
109,879	+		PGA1_c01160	0.33	-3.6
109,880	-		PGA1_c01160	0.33	-2.3
109,922	-		PGA1_c01160	0.35	-1.1
109,927	+		PGA1_c01160	0.36	-0.7
110,020	+		PGA1_c01160	0.41	-0.7
110,036	+		PGA1_c01160	0.42	+0.9
110,039	-		PGA1_c01160	0.42	-1.9
110,041	+		PGA1_c01160	0.42	-1.5
110,041	+		PGA1_c01160	0.42	-0.6
110,103	+		PGA1_c01160	0.46	-1.0
110,132	+		PGA1_c01160	0.48	-2.2
110,138	+		PGA1_c01160	0.48	-0.6
110,140	-		PGA1_c01160	0.48	-1.2
110,141	-		PGA1_c01160	0.48	-1.2
110,144	+		PGA1_c01160	0.48	+0.6
110,152	-		PGA1_c01160	0.49	-0.9
110,177	+		PGA1_c01160	0.50	-1.9
110,200	+		PGA1_c01160	0.52	-1.8
110,289	+		PGA1_c01160	0.57	-1.1
110,297	+		PGA1_c01160	0.57	-1.0
110,308	+		PGA1_c01160	0.58	-0.1
110,316	-		PGA1_c01160	0.58	-0.2
110,316	-		PGA1_c01160	0.58	-1.4
110,316	-		PGA1_c01160	0.58	+0.6
110,318	+		PGA1_c01160	0.58	-1.4
110,318	+		PGA1_c01160	0.58	-0.3
110,318	+		PGA1_c01160	0.58	-1.7
110,326	-		PGA1_c01160	0.59	-2.4
110,326	-		PGA1_c01160	0.59	-1.9
110,326	-		PGA1_c01160	0.59	-2.6
110,414	+		PGA1_c01160	0.64	-2.5
110,514	+		PGA1_c01160	0.70	-0.8
110,522	-		PGA1_c01160	0.70	-1.2
110,522	-		PGA1_c01160	0.70	-2.1
110,544	-		PGA1_c01160	0.72	-0.1
110,546	+		PGA1_c01160	0.72	-2.8
110,564	-		PGA1_c01160	0.73	-1.1
110,564	-		PGA1_c01160	0.73	-1.3
110,629	-		PGA1_c01160	0.77	-1.8
110,700	-		PGA1_c01160	0.81	-0.9
110,701	-		PGA1_c01160	0.81	-1.3
110,701	-		PGA1_c01160	0.81	-3.3
110,734	+		PGA1_c01160	0.83	-2.4
110,814	+		PGA1_c01160	0.87	-1.8
110,822	-		PGA1_c01160	0.88	-1.1
110,837	+		PGA1_c01160	0.89	-1.3
110,845	-		PGA1_c01160	0.89	-3.3
110,847	-		PGA1_c01160	0.89	-1.2
110,881	+				-2.1
110,886	+				-1.4
110,894	-				-1.3
110,899	-				-1.9
110,935	-				-0.1
110,936	+				-1.1
110,936	+				+3.0
110,936	+				-1.4
110,936	+				-1.9
110,936	+				-1.4
110,941	+				-2.5
110,941	+				-2.6
110,944	-				-1.1
110,944	-				-1.8
110,944	-				-2.3
110,944	-				-2.0
110,949	-				-1.5
110,949	-				-1.2
110,949	-				-0.7
110,980	-				-3.0
111,041	+				-0.1
111,048	+				+1.0
111,048	+				+0.3
111,049	-				-0.3
111,051	-				-0.3
111,056	-				+0.8
111,094	+				-1.6
111,094	+				+0.9
111,169	-		PGA1_c01170	0.20	-1.2
111,174	-		PGA1_c01170	0.21	+0.7
111,176	+		PGA1_c01170	0.22	+0.9
111,179	-		PGA1_c01170	0.22	-1.0
111,258	+		PGA1_c01170	0.43	+0.4
111,258	+		PGA1_c01170	0.43	+0.8
111,258	+		PGA1_c01170	0.43	-0.2
111,258	+		PGA1_c01170	0.43	+0.3
111,258	+		PGA1_c01170	0.43	-1.3
111,266	-		PGA1_c01170	0.46	+0.6
111,266	-		PGA1_c01170	0.46	-0.3
111,266	-		PGA1_c01170	0.46	-1.5
111,266	-		PGA1_c01170	0.46	-0.1
111,266	-		PGA1_c01170	0.46	-1.8
111,266	-		PGA1_c01170	0.46	+1.0
111,266	-		PGA1_c01170	0.46	-0.4
111,276	-		PGA1_c01170	0.48	-1.1
111,325	+		PGA1_c01170	0.61	-0.9
111,325	+		PGA1_c01170	0.61	-0.9
111,333	-		PGA1_c01170	0.63	+1.3
111,423	+		PGA1_c01170	0.87	-0.7
111,423	+		PGA1_c01170	0.87	+1.0
111,423	+		PGA1_c01170	0.87	-0.1
111,431	-		PGA1_c01170	0.90	+0.0
111,431	-		PGA1_c01170	0.90	+0.9
111,459	-				+0.1
111,464	-				+0.1
111,528	+				+0.9
111,542	-				-2.1
111,544	-				+1.0
111,582	+		PGA1_c01180	0.13	+1.4
111,621	+		PGA1_c01180	0.18	-0.8
111,703	-		PGA1_c01180	0.27	-0.1
111,802	+		PGA1_c01180	0.38	-1.9
111,810	-		PGA1_c01180	0.39	+0.6
111,861	-		PGA1_c01180	0.45	-0.5
111,954	+		PGA1_c01180	0.55	+0.0
111,968	+		PGA1_c01180	0.57	-0.7
111,968	+		PGA1_c01180	0.57	-0.3
111,968	+		PGA1_c01180	0.57	+0.4
111,968	+		PGA1_c01180	0.57	-0.1
111,968	+		PGA1_c01180	0.57	-1.9
111,968	+		PGA1_c01180	0.57	+0.4
111,968	+		PGA1_c01180	0.57	-0.4
111,968	+		PGA1_c01180	0.57	-0.1
111,968	+		PGA1_c01180	0.57	+0.7
111,968	+		PGA1_c01180	0.57	-0.1
111,975	+		PGA1_c01180	0.58	+1.1
111,976	-		PGA1_c01180	0.58	+1.1
111,976	-		PGA1_c01180	0.58	-0.9
111,976	-		PGA1_c01180	0.58	-0.0
111,976	-		PGA1_c01180	0.58	-0.8
111,976	-		PGA1_c01180	0.58	+0.1