Experiment: m.b. Gentamicin 0.002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c11150 and PGA1_c11160 are separated by 164 nucleotides PGA1_c11160 and PGA1_c11170 overlap by 8 nucleotides PGA1_c11170 and PGA1_c11180 overlap by 1 nucleotides
PGA1_c11150: PGA1_c11150 - Sporulation related domain., at 1,152,859 to 1,154,241
_c11150
PGA1_c11160: PGA1_c11160 - putative beta-hexosaminidase, at 1,154,406 to 1,155,410
_c11160
PGA1_c11170: PGA1_c11170 - segregation and condensation protein A, at 1,155,403 to 1,156,194
_c11170
PGA1_c11180: PGA1_c11180 - segregation and condensation protein B, at 1,156,194 to 1,156,856
_c11180
Position (kb)
1154
1155
1156 Strain fitness (log2 ratio)
-1
0
1
2 at 1154.225 kb on - strand at 1154.278 kb on + strand at 1154.279 kb on - strand at 1154.279 kb on - strand at 1154.351 kb on - strand at 1154.416 kb on - strand at 1154.416 kb on - strand at 1154.486 kb on + strand at 1154.488 kb on - strand at 1154.536 kb on + strand, within PGA1_c11160 at 1154.548 kb on + strand, within PGA1_c11160 at 1154.548 kb on + strand, within PGA1_c11160 at 1154.556 kb on - strand, within PGA1_c11160 at 1154.588 kb on - strand, within PGA1_c11160 at 1154.829 kb on + strand, within PGA1_c11160 at 1154.873 kb on - strand, within PGA1_c11160 at 1154.873 kb on - strand, within PGA1_c11160 at 1154.924 kb on - strand, within PGA1_c11160 at 1155.077 kb on + strand, within PGA1_c11160 at 1155.398 kb on + strand at 1155.415 kb on + strand at 1155.417 kb on + strand at 1155.839 kb on - strand, within PGA1_c11170 at 1156.024 kb on - strand, within PGA1_c11170 at 1156.060 kb on - strand, within PGA1_c11170 at 1156.084 kb on + strand, within PGA1_c11170 at 1156.208 kb on + strand at 1156.230 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Gentamicin 0.002 mg/ml remove 1,154,225 - +0.8 1,154,278 + +0.8 1,154,279 - +1.8 1,154,279 - +0.8 1,154,351 - +0.8 1,154,416 - +0.8 1,154,416 - -0.2 1,154,486 + -0.2 1,154,488 - +0.8 1,154,536 + PGA1_c11160 0.13 -0.2 1,154,548 + PGA1_c11160 0.14 -1.2 1,154,548 + PGA1_c11160 0.14 +0.8 1,154,556 - PGA1_c11160 0.15 +0.8 1,154,588 - PGA1_c11160 0.18 +0.8 1,154,829 + PGA1_c11160 0.42 -0.2 1,154,873 - PGA1_c11160 0.46 -1.7 1,154,873 - PGA1_c11160 0.46 +0.8 1,154,924 - PGA1_c11160 0.52 -0.2 1,155,077 + PGA1_c11160 0.67 +0.8 1,155,398 + -1.7 1,155,415 + -0.7 1,155,417 + +0.8 1,155,839 - PGA1_c11170 0.55 -0.2 1,156,024 - PGA1_c11170 0.78 -0.2 1,156,060 - PGA1_c11170 0.83 -0.7 1,156,084 + PGA1_c11170 0.86 -1.2 1,156,208 + -0.2 1,156,230 + +0.8
Or see this region's nucleotide sequence