Strain Fitness in Dechlorosoma suillum PS around Dsui_3538

Experiment: Anaero. lactate (C), perchlorate electron acceptor

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_3536 and Dsui_3537 are separated by 15 nucleotidesDsui_3537 and Dsui_3538 are separated by 8 nucleotidesDsui_3538 and Dsui_3539 are separated by 100 nucleotides Dsui_3536: Dsui_3536 - leucyl aminopeptidase, at 3,801,530 to 3,803,026 _3536 Dsui_3537: Dsui_3537 - DNA polymerase III, chi subunit, at 3,803,042 to 3,803,473 _3537 Dsui_3538: Dsui_3538 - hypothetical protein, at 3,803,482 to 3,803,961 _3538 Dsui_3539: Dsui_3539 - valyl-tRNA synthetase, at 3,804,062 to 3,806,899 _3539 Position (kb) 3803 3804Strain fitness (log2 ratio) -2 -1 0 1 2at 3802.783 kb on + strand, within Dsui_3536at 3802.807 kb on + strand, within Dsui_3536at 3802.924 kb on + strandat 3803.020 kb on + strandat 3803.029 kb on - strandat 3803.458 kb on + strandat 3803.685 kb on - strandat 3803.805 kb on - strandat 3803.805 kb on - strand, within Dsui_3538at 3803.822 kb on - strand, within Dsui_3538at 3803.822 kb on - strandat 3803.950 kb on - strandat 3803.995 kb on + strandat 3804.024 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaero. lactate (C), perchlorate electron acceptor
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3,802,783 + Dsui_3536 0.84 -0.9
3,802,807 + Dsui_3536 0.85 -0.6
3,802,924 + -0.8
3,803,020 + +0.1
3,803,029 - -1.0
3,803,458 + -0.6
3,803,685 - +1.3
3,803,805 - +0.6
3,803,805 - Dsui_3538 0.67 +0.5
3,803,822 - Dsui_3538 0.71 -0.9
3,803,822 - +0.3
3,803,950 - +1.9
3,803,995 + -1.6
3,804,024 + -2.6

Or see this region's nucleotide sequence