Experiment: Anaero. lactate (C), perchlorate electron acceptor
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_3504 and Dsui_3505 overlap by 1 nucleotides Dsui_3505 and Dsui_3506 are separated by 93 nucleotides Dsui_3506 and Dsui_3507 are separated by 110 nucleotides
Dsui_3504: Dsui_3504 - rhodanese-related sulfurtransferase, at 3,769,664 to 3,770,512
_3504
Dsui_3505: Dsui_3505 - Protein of unknown function (DUF3478), at 3,770,512 to 3,770,868
_3505
Dsui_3506: Dsui_3506 - putative permease, DMT superfamily, at 3,770,962 to 3,771,819
_3506
Dsui_3507: Dsui_3507 - ring-hydroxylating dioxygenase, large terminal subunit, at 3,771,930 to 3,773,039
_3507
Position (kb)
3770
3771
3772 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 3770.225 kb on + strand, within Dsui_3504 at 3770.376 kb on + strand at 3770.411 kb on + strand, within Dsui_3504 at 3770.478 kb on - strand at 3770.616 kb on - strand, within Dsui_3505 at 3770.627 kb on - strand, within Dsui_3505 at 3770.669 kb on + strand, within Dsui_3505 at 3770.709 kb on - strand, within Dsui_3505 at 3770.720 kb on + strand at 3770.784 kb on + strand, within Dsui_3505 at 3770.793 kb on + strand, within Dsui_3505 at 3770.801 kb on - strand, within Dsui_3505 at 3770.801 kb on - strand, within Dsui_3505 at 3770.839 kb on - strand at 3770.845 kb on + strand at 3770.871 kb on - strand at 3770.872 kb on - strand at 3770.877 kb on - strand at 3770.877 kb on - strand at 3770.877 kb on - strand at 3770.877 kb on - strand at 3770.877 kb on - strand at 3770.928 kb on + strand at 3770.936 kb on - strand at 3770.960 kb on + strand at 3770.960 kb on + strand at 3770.991 kb on - strand at 3771.147 kb on - strand, within Dsui_3506 at 3771.180 kb on - strand, within Dsui_3506 at 3771.207 kb on + strand, within Dsui_3506 at 3771.297 kb on - strand, within Dsui_3506 at 3771.297 kb on - strand, within Dsui_3506 at 3771.319 kb on + strand, within Dsui_3506 at 3771.324 kb on + strand at 3771.347 kb on - strand, within Dsui_3506 at 3771.441 kb on + strand at 3771.493 kb on + strand, within Dsui_3506 at 3771.523 kb on - strand, within Dsui_3506 at 3771.617 kb on + strand at 3771.652 kb on - strand, within Dsui_3506 at 3771.654 kb on + strand at 3771.662 kb on + strand at 3771.666 kb on + strand at 3771.673 kb on - strand, within Dsui_3506 at 3771.690 kb on + strand, within Dsui_3506 at 3771.729 kb on + strand at 3771.776 kb on - strand at 3771.950 kb on - strand at 3771.977 kb on + strand at 3772.038 kb on - strand at 3772.058 kb on - strand, within Dsui_3507 at 3772.135 kb on - strand, within Dsui_3507 at 3772.146 kb on - strand, within Dsui_3507 at 3772.156 kb on + strand, within Dsui_3507 at 3772.161 kb on + strand, within Dsui_3507 at 3772.232 kb on - strand, within Dsui_3507 at 3772.333 kb on - strand, within Dsui_3507 at 3772.346 kb on - strand, within Dsui_3507 at 3772.361 kb on + strand at 3772.367 kb on + strand at 3772.393 kb on + strand, within Dsui_3507 at 3772.429 kb on - strand, within Dsui_3507 at 3772.477 kb on + strand at 3772.486 kb on - strand, within Dsui_3507 at 3772.592 kb on + strand, within Dsui_3507 at 3772.605 kb on - strand, within Dsui_3507 at 3772.618 kb on + strand, within Dsui_3507 at 3772.669 kb on - strand, within Dsui_3507 at 3772.696 kb on + strand, within Dsui_3507 at 3772.754 kb on + strand, within Dsui_3507 at 3772.765 kb on + strand at 3772.767 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Anaero. lactate (C), perchlorate electron acceptor remove 3,770,225 + Dsui_3504 0.66 +0.4 3,770,376 + -0.1 3,770,411 + Dsui_3504 0.88 +0.5 3,770,478 - -0.1 3,770,616 - Dsui_3505 0.29 +0.3 3,770,627 - Dsui_3505 0.32 +0.4 3,770,669 + Dsui_3505 0.44 -1.6 3,770,709 - Dsui_3505 0.55 -0.4 3,770,720 + +0.9 3,770,784 + Dsui_3505 0.76 -1.8 3,770,793 + Dsui_3505 0.79 +0.2 3,770,801 - Dsui_3505 0.81 -0.2 3,770,801 - Dsui_3505 0.81 -0.2 3,770,839 - -0.2 3,770,845 + +0.8 3,770,871 - +0.3 3,770,872 - +0.9 3,770,877 - -0.4 3,770,877 - +0.8 3,770,877 - +1.4 3,770,877 - +0.1 3,770,877 - +0.7 3,770,928 + +0.3 3,770,936 - +0.8 3,770,960 + +1.9 3,770,960 + +0.3 3,770,991 - -3.1 3,771,147 - Dsui_3506 0.22 -3.3 3,771,180 - Dsui_3506 0.25 -0.6 3,771,207 + Dsui_3506 0.29 -1.1 3,771,297 - Dsui_3506 0.39 -1.8 3,771,297 - Dsui_3506 0.39 -0.1 3,771,319 + Dsui_3506 0.42 -2.3 3,771,324 + +0.9 3,771,347 - Dsui_3506 0.45 -1.6 3,771,441 + +1.9 3,771,493 + Dsui_3506 0.62 -2.0 3,771,523 - Dsui_3506 0.65 -2.3 3,771,617 + +0.9 3,771,652 - Dsui_3506 0.80 -1.0 3,771,654 + -0.1 3,771,662 + -0.1 3,771,666 + +1.9 3,771,673 - Dsui_3506 0.83 -1.2 3,771,690 + Dsui_3506 0.85 -0.9 3,771,729 + -0.1 3,771,776 - -1.0 3,771,950 - +1.3 3,771,977 + -0.4 3,772,038 - +0.7 3,772,058 - Dsui_3507 0.12 +1.0 3,772,135 - Dsui_3507 0.18 +0.7 3,772,146 - Dsui_3507 0.19 +0.4 3,772,156 + Dsui_3507 0.20 +0.5 3,772,161 + Dsui_3507 0.21 -0.3 3,772,232 - Dsui_3507 0.27 +0.2 3,772,333 - Dsui_3507 0.36 +1.2 3,772,346 - Dsui_3507 0.37 +1.2 3,772,361 + +0.9 3,772,367 + +0.3 3,772,393 + Dsui_3507 0.42 +0.4 3,772,429 - Dsui_3507 0.45 +0.4 3,772,477 + +2.8 3,772,486 - Dsui_3507 0.50 -0.4 3,772,592 + Dsui_3507 0.60 +0.0 3,772,605 - Dsui_3507 0.61 +0.8 3,772,618 + Dsui_3507 0.62 +0.1 3,772,669 - Dsui_3507 0.67 -0.9 3,772,696 + Dsui_3507 0.69 +0.4 3,772,754 + Dsui_3507 0.74 +0.3 3,772,765 + +0.3 3,772,767 + +1.9
Or see this region's nucleotide sequence