Strain Fitness in Dechlorosoma suillum PS around Dsui_3106

Experiment: Anaero. lactate (C), perchlorate electron acceptor

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_3105 and Dsui_3106 are separated by 291 nucleotidesDsui_3106 and Dsui_3107 overlap by 8 nucleotidesDsui_3107 and Dsui_3108 are separated by 38 nucleotides Dsui_3105: Dsui_3105 - CBS domain-containing protein, at 3,324,730 to 3,326,046 _3105 Dsui_3106: Dsui_3106 - hypothetical protein, at 3,326,338 to 3,326,718 _3106 Dsui_3107: Dsui_3107 - Zn-dependent hydrolase, glyoxylase, at 3,326,711 to 3,327,349 _3107 Dsui_3108: Dsui_3108 - PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein, at 3,327,388 to 3,330,702 _3108 Position (kb) 3326 3327Strain fitness (log2 ratio) -1 0 1 2at 3325.534 kb on - strand, within Dsui_3105at 3325.736 kb on + strand, within Dsui_3105at 3325.744 kb on - strand, within Dsui_3105at 3325.791 kb on + strand, within Dsui_3105at 3325.798 kb on + strand, within Dsui_3105at 3325.799 kb on - strand, within Dsui_3105at 3326.076 kb on + strandat 3326.084 kb on - strandat 3326.084 kb on - strandat 3326.168 kb on - strandat 3326.227 kb on - strandat 3326.270 kb on - strandat 3326.344 kb on - strandat 3326.513 kb on - strand, within Dsui_3106at 3326.572 kb on + strand, within Dsui_3106at 3326.581 kb on + strandat 3326.647 kb on - strand, within Dsui_3106at 3326.903 kb on - strand, within Dsui_3107at 3326.908 kb on + strandat 3326.912 kb on - strand, within Dsui_3107at 3326.974 kb on - strand, within Dsui_3107at 3327.039 kb on - strand, within Dsui_3107at 3327.073 kb on + strandat 3327.090 kb on + strandat 3327.189 kb on + strandat 3327.199 kb on + strandat 3327.205 kb on + strandat 3327.213 kb on - strand, within Dsui_3107at 3327.213 kb on - strand, within Dsui_3107at 3327.291 kb on + strandat 3327.359 kb on - strandat 3327.518 kb on - strandat 3327.579 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaero. lactate (C), perchlorate electron acceptor
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3,325,534 - Dsui_3105 0.61 +1.1
3,325,736 + Dsui_3105 0.76 +1.3
3,325,744 - Dsui_3105 0.77 +1.2
3,325,791 + Dsui_3105 0.81 +0.6
3,325,798 + Dsui_3105 0.81 +2.0
3,325,799 - Dsui_3105 0.81 +1.6
3,326,076 + +0.7
3,326,084 - +0.4
3,326,084 - +1.5
3,326,168 - +0.7
3,326,227 - -0.4
3,326,270 - +0.4
3,326,344 - +0.2
3,326,513 - Dsui_3106 0.46 +0.6
3,326,572 + Dsui_3106 0.61 -0.1
3,326,581 + +1.9
3,326,647 - Dsui_3106 0.81 -0.2
3,326,903 - Dsui_3107 0.30 +0.4
3,326,908 + +0.5
3,326,912 - Dsui_3107 0.31 +0.0
3,326,974 - Dsui_3107 0.41 +0.1
3,327,039 - Dsui_3107 0.51 -0.5
3,327,073 + -0.7
3,327,090 + +1.9
3,327,189 + +0.3
3,327,199 + +0.9
3,327,205 + +1.9
3,327,213 - Dsui_3107 0.79 -0.5
3,327,213 - Dsui_3107 0.79 -0.1
3,327,291 + +1.9
3,327,359 - +0.1
3,327,518 - +0.9
3,327,579 + -1.0

Or see this region's nucleotide sequence