Strain Fitness in Dechlorosoma suillum PS around Dsui_3078

Experiment: Anaero. lactate (C), perchlorate electron acceptor

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_3077 and Dsui_3078 are separated by 41 nucleotidesDsui_3078 and Dsui_3079 are separated by 89 nucleotides Dsui_3077: Dsui_3077 - hypothetical protein, at 3,292,438 to 3,293,505 _3077 Dsui_3078: Dsui_3078 - methyl-accepting chemotaxis protein, at 3,293,547 to 3,295,166 _3078 Dsui_3079: Dsui_3079 - serine/threonine protein kinase, at 3,295,256 to 3,296,653 _3079 Position (kb) 3293 3294 3295 3296Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3292.682 kb on + strand, within Dsui_3077at 3292.688 kb on + strand, within Dsui_3077at 3292.690 kb on - strandat 3292.844 kb on + strand, within Dsui_3077at 3292.861 kb on + strand, within Dsui_3077at 3292.895 kb on + strandat 3292.913 kb on - strandat 3292.946 kb on + strand, within Dsui_3077at 3293.027 kb on + strandat 3293.107 kb on + strand, within Dsui_3077at 3293.149 kb on - strand, within Dsui_3077at 3293.292 kb on + strand, within Dsui_3077at 3293.321 kb on + strand, within Dsui_3077at 3293.346 kb on + strand, within Dsui_3077at 3293.390 kb on + strand, within Dsui_3077at 3293.397 kb on + strand, within Dsui_3077at 3293.439 kb on - strandat 3293.460 kb on + strandat 3293.470 kb on - strandat 3293.500 kb on + strandat 3293.503 kb on - strandat 3293.503 kb on - strandat 3293.520 kb on + strandat 3293.541 kb on - strandat 3293.551 kb on - strandat 3293.599 kb on + strandat 3293.628 kb on - strandat 3293.672 kb on - strandat 3293.721 kb on - strandat 3293.873 kb on + strand, within Dsui_3078at 3293.873 kb on + strand, within Dsui_3078at 3293.876 kb on - strand, within Dsui_3078at 3293.878 kb on + strand, within Dsui_3078at 3293.909 kb on + strand, within Dsui_3078at 3293.909 kb on + strand, within Dsui_3078at 3293.962 kb on + strand, within Dsui_3078at 3293.980 kb on - strand, within Dsui_3078at 3293.991 kb on + strand, within Dsui_3078at 3294.071 kb on + strand, within Dsui_3078at 3294.409 kb on + strand, within Dsui_3078at 3294.422 kb on - strand, within Dsui_3078at 3294.442 kb on - strand, within Dsui_3078at 3294.513 kb on - strand, within Dsui_3078at 3294.533 kb on - strand, within Dsui_3078at 3294.586 kb on + strand, within Dsui_3078at 3294.661 kb on - strand, within Dsui_3078at 3294.839 kb on + strand, within Dsui_3078at 3294.882 kb on + strand, within Dsui_3078at 3294.901 kb on - strand, within Dsui_3078at 3294.971 kb on - strand, within Dsui_3078at 3295.029 kb on + strandat 3295.039 kb on + strandat 3295.064 kb on - strandat 3295.160 kb on + strandat 3295.168 kb on - strandat 3295.486 kb on + strand, within Dsui_3079at 3295.494 kb on - strand, within Dsui_3079at 3295.494 kb on - strand, within Dsui_3079at 3295.501 kb on + strand, within Dsui_3079at 3295.509 kb on - strand, within Dsui_3079at 3295.552 kb on + strand, within Dsui_3079at 3295.555 kb on - strand, within Dsui_3079at 3295.568 kb on - strand, within Dsui_3079at 3295.639 kb on + strandat 3295.692 kb on + strand, within Dsui_3079at 3295.712 kb on + strand, within Dsui_3079at 3295.759 kb on + strand, within Dsui_3079at 3295.783 kb on - strand, within Dsui_3079at 3295.783 kb on - strand, within Dsui_3079at 3295.818 kb on + strand, within Dsui_3079at 3295.826 kb on - strand, within Dsui_3079at 3295.845 kb on - strand, within Dsui_3079at 3295.934 kb on + strand, within Dsui_3079at 3295.942 kb on - strand, within Dsui_3079at 3295.952 kb on + strand, within Dsui_3079at 3295.975 kb on - strand, within Dsui_3079at 3296.040 kb on - strand, within Dsui_3079at 3296.073 kb on + strandat 3296.073 kb on + strand, within Dsui_3079at 3296.073 kb on + strand, within Dsui_3079at 3296.073 kb on + strandat 3296.073 kb on + strandat 3296.073 kb on + strandat 3296.073 kb on + strand, within Dsui_3079at 3296.073 kb on + strand, within Dsui_3079at 3296.075 kb on - strand, within Dsui_3079at 3296.081 kb on - strand, within Dsui_3079at 3296.081 kb on - strand, within Dsui_3079at 3296.081 kb on - strand, within Dsui_3079at 3296.081 kb on - strand, within Dsui_3079at 3296.081 kb on - strand, within Dsui_3079at 3296.081 kb on - strand, within Dsui_3079at 3296.081 kb on - strand, within Dsui_3079at 3296.145 kb on + strand, within Dsui_3079at 3296.147 kb on + strandat 3296.147 kb on - strand, within Dsui_3079

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaero. lactate (C), perchlorate electron acceptor
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3,292,682 + Dsui_3077 0.23 +1.4
3,292,688 + Dsui_3077 0.23 -0.8
3,292,690 - -1.3
3,292,844 + Dsui_3077 0.38 +0.3
3,292,861 + Dsui_3077 0.40 +0.2
3,292,895 + +1.6
3,292,913 - -0.1
3,292,946 + Dsui_3077 0.48 -0.1
3,293,027 + +1.5
3,293,107 + Dsui_3077 0.63 -0.7
3,293,149 - Dsui_3077 0.67 +0.5
3,293,292 + Dsui_3077 0.80 +0.1
3,293,321 + Dsui_3077 0.83 -0.2
3,293,346 + Dsui_3077 0.85 +0.4
3,293,390 + Dsui_3077 0.89 +0.4
3,293,397 + Dsui_3077 0.90 -0.5
3,293,439 - +0.1
3,293,460 + +0.0
3,293,470 - -1.3
3,293,500 + -0.1
3,293,503 - +1.4
3,293,503 - -1.3
3,293,520 + -0.0
3,293,541 - +0.2
3,293,551 - -1.1
3,293,599 + +0.5
3,293,628 - +0.6
3,293,672 - -0.5
3,293,721 - -0.1
3,293,873 + Dsui_3078 0.20 +0.6
3,293,873 + Dsui_3078 0.20 +0.2
3,293,876 - Dsui_3078 0.20 +0.9
3,293,878 + Dsui_3078 0.20 +0.2
3,293,909 + Dsui_3078 0.22 +0.4
3,293,909 + Dsui_3078 0.22 +0.0
3,293,962 + Dsui_3078 0.26 -0.0
3,293,980 - Dsui_3078 0.27 +0.6
3,293,991 + Dsui_3078 0.27 +0.1
3,294,071 + Dsui_3078 0.32 +0.6
3,294,409 + Dsui_3078 0.53 +0.3
3,294,422 - Dsui_3078 0.54 -0.3
3,294,442 - Dsui_3078 0.55 -0.0
3,294,513 - Dsui_3078 0.60 -1.6
3,294,533 - Dsui_3078 0.61 +0.4
3,294,586 + Dsui_3078 0.64 -0.3
3,294,661 - Dsui_3078 0.69 +1.4
3,294,839 + Dsui_3078 0.80 +1.3
3,294,882 + Dsui_3078 0.82 +0.9
3,294,901 - Dsui_3078 0.84 +0.5
3,294,971 - Dsui_3078 0.88 -0.0
3,295,029 + +0.9
3,295,039 + +0.1
3,295,064 - +0.3
3,295,160 + +0.0
3,295,168 - -1.0
3,295,486 + Dsui_3079 0.16 +0.1
3,295,494 - Dsui_3079 0.17 +0.4
3,295,494 - Dsui_3079 0.17 +0.5
3,295,501 + Dsui_3079 0.18 +0.7
3,295,509 - Dsui_3079 0.18 -0.8
3,295,552 + Dsui_3079 0.21 -0.6
3,295,555 - Dsui_3079 0.21 +0.1
3,295,568 - Dsui_3079 0.22 +0.1
3,295,639 + +1.1
3,295,692 + Dsui_3079 0.31 -0.4
3,295,712 + Dsui_3079 0.33 +0.3
3,295,759 + Dsui_3079 0.36 +0.4
3,295,783 - Dsui_3079 0.38 +0.4
3,295,783 - Dsui_3079 0.38 +0.9
3,295,818 + Dsui_3079 0.40 -0.7
3,295,826 - Dsui_3079 0.41 +0.0
3,295,845 - Dsui_3079 0.42 +0.5
3,295,934 + Dsui_3079 0.48 +0.4
3,295,942 - Dsui_3079 0.49 +0.2
3,295,952 + Dsui_3079 0.50 -0.5
3,295,975 - Dsui_3079 0.51 +1.0
3,296,040 - Dsui_3079 0.56 +0.3
3,296,073 + +1.5
3,296,073 + Dsui_3079 0.58 -0.2
3,296,073 + Dsui_3079 0.58 -1.9
3,296,073 + +1.4
3,296,073 + +3.4
3,296,073 + +0.5
3,296,073 + Dsui_3079 0.58 +2.9
3,296,073 + Dsui_3079 0.58 +1.9
3,296,075 - Dsui_3079 0.59 +0.3
3,296,081 - Dsui_3079 0.59 +1.1
3,296,081 - Dsui_3079 0.59 +0.1
3,296,081 - Dsui_3079 0.59 -0.3
3,296,081 - Dsui_3079 0.59 +0.3
3,296,081 - Dsui_3079 0.59 +0.2
3,296,081 - Dsui_3079 0.59 -0.2
3,296,081 - Dsui_3079 0.59 +0.3
3,296,145 + Dsui_3079 0.64 -0.3
3,296,147 + +0.9
3,296,147 - Dsui_3079 0.64 +0.4

Or see this region's nucleotide sequence