Experiment: Anaero. lactate (C), perchlorate electron acceptor
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2898 and Dsui_2899 are separated by 42 nucleotides Dsui_2899 and Dsui_2900 overlap by 4 nucleotides
Dsui_2898: Dsui_2898 - yjeF-like protein, hydroxyethylthiazole kinase-related protein, at 3,100,605 to 3,102,113
_2898
Dsui_2899: Dsui_2899 - putative permease, DMT superfamily, at 3,102,156 to 3,103,034
_2899
Dsui_2900: Dsui_2900 - glutamate synthase family protein, at 3,103,031 to 3,104,515
_2900
Position (kb)
3102
3103
3104 Strain fitness (log2 ratio)
-1
0
1
2 at 3101.181 kb on - strand at 3101.506 kb on - strand at 3101.702 kb on + strand at 3101.825 kb on - strand at 3101.970 kb on + strand at 3102.045 kb on - strand at 3102.224 kb on + strand at 3102.236 kb on + strand at 3102.270 kb on + strand, within Dsui_2899 at 3102.333 kb on - strand at 3102.344 kb on - strand at 3102.433 kb on + strand, within Dsui_2899 at 3102.479 kb on + strand, within Dsui_2899 at 3102.581 kb on + strand, within Dsui_2899 at 3102.618 kb on + strand, within Dsui_2899 at 3102.618 kb on + strand, within Dsui_2899 at 3102.620 kb on - strand at 3102.623 kb on + strand, within Dsui_2899 at 3102.643 kb on + strand, within Dsui_2899 at 3102.724 kb on - strand at 3102.787 kb on + strand, within Dsui_2899 at 3102.795 kb on - strand at 3102.797 kb on - strand, within Dsui_2899 at 3102.800 kb on - strand at 3103.050 kb on + strand at 3103.203 kb on + strand, within Dsui_2900 at 3103.211 kb on - strand, within Dsui_2900 at 3103.312 kb on + strand, within Dsui_2900 at 3103.320 kb on - strand, within Dsui_2900 at 3103.520 kb on + strand, within Dsui_2900 at 3103.961 kb on - strand, within Dsui_2900 at 3103.992 kb on - strand, within Dsui_2900 at 3104.030 kb on + strand at 3104.032 kb on - strand, within Dsui_2900
Per-strain Table
Position Strand Gene LocusTag Fraction Anaero. lactate (C), perchlorate electron acceptor remove 3,101,181 - +1.4 3,101,506 - +2.0 3,101,702 + +2.0 3,101,825 - +2.0 3,101,970 + +0.1 3,102,045 - +0.6 3,102,224 + +0.2 3,102,236 + -0.3 3,102,270 + Dsui_2899 0.13 +0.1 3,102,333 - -0.4 3,102,344 - +1.0 3,102,433 + Dsui_2899 0.32 +0.8 3,102,479 + Dsui_2899 0.37 +0.6 3,102,581 + Dsui_2899 0.48 +0.4 3,102,618 + Dsui_2899 0.53 -0.3 3,102,618 + Dsui_2899 0.53 +1.0 3,102,620 - +1.4 3,102,623 + Dsui_2899 0.53 +0.5 3,102,643 + Dsui_2899 0.55 +0.7 3,102,724 - -0.4 3,102,787 + Dsui_2899 0.72 +0.1 3,102,795 - +1.2 3,102,797 - Dsui_2899 0.73 +2.0 3,102,800 - +2.0 3,103,050 + -0.8 3,103,203 + Dsui_2900 0.12 -0.0 3,103,211 - Dsui_2900 0.12 -0.7 3,103,312 + Dsui_2900 0.19 +0.1 3,103,320 - Dsui_2900 0.19 +0.4 3,103,520 + Dsui_2900 0.33 +0.1 3,103,961 - Dsui_2900 0.63 -1.2 3,103,992 - Dsui_2900 0.65 -0.3 3,104,030 + -0.4 3,104,032 - Dsui_2900 0.67 -1.0
Or see this region's nucleotide sequence