Experiment: Anaero. lactate (C), perchlorate electron acceptor
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2749 and Dsui_2750 are separated by 136 nucleotides Dsui_2750 and Dsui_2751 are separated by 76 nucleotides
Dsui_2749: Dsui_2749 - putative acyltransferase, at 2,904,360 to 2,905,478
_2749
Dsui_2750: Dsui_2750 - cyanophycin synthetase, at 2,905,615 to 2,908,200
_2750
Dsui_2751: Dsui_2751 - cyanophycin synthetase, at 2,908,277 to 2,910,445
_2751
Position (kb)
2905
2906
2907
2908
2909 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2904.636 kb on - strand, within Dsui_2749 at 2904.669 kb on + strand, within Dsui_2749 at 2904.677 kb on - strand, within Dsui_2749 at 2904.677 kb on - strand, within Dsui_2749 at 2904.677 kb on - strand, within Dsui_2749 at 2904.677 kb on - strand, within Dsui_2749 at 2904.810 kb on - strand, within Dsui_2749 at 2904.884 kb on - strand, within Dsui_2749 at 2904.905 kb on + strand, within Dsui_2749 at 2904.913 kb on - strand, within Dsui_2749 at 2904.984 kb on - strand, within Dsui_2749 at 2905.080 kb on + strand, within Dsui_2749 at 2905.102 kb on + strand, within Dsui_2749 at 2905.143 kb on - strand, within Dsui_2749 at 2905.146 kb on + strand, within Dsui_2749 at 2905.221 kb on - strand, within Dsui_2749 at 2905.221 kb on - strand, within Dsui_2749 at 2905.307 kb on + strand, within Dsui_2749 at 2905.315 kb on - strand, within Dsui_2749 at 2905.403 kb on - strand at 2905.433 kb on + strand at 2905.482 kb on + strand at 2905.613 kb on + strand at 2905.703 kb on - strand at 2905.705 kb on + strand at 2905.705 kb on + strand at 2905.713 kb on - strand at 2905.746 kb on + strand at 2905.843 kb on - strand at 2906.092 kb on - strand, within Dsui_2750 at 2906.135 kb on - strand, within Dsui_2750 at 2906.193 kb on - strand, within Dsui_2750 at 2906.232 kb on - strand, within Dsui_2750 at 2906.350 kb on + strand at 2906.350 kb on + strand, within Dsui_2750 at 2906.465 kb on + strand, within Dsui_2750 at 2906.467 kb on - strand, within Dsui_2750 at 2906.473 kb on - strand, within Dsui_2750 at 2906.478 kb on - strand, within Dsui_2750 at 2906.541 kb on - strand, within Dsui_2750 at 2906.662 kb on + strand at 2906.719 kb on - strand, within Dsui_2750 at 2906.841 kb on - strand, within Dsui_2750 at 2906.957 kb on - strand, within Dsui_2750 at 2907.070 kb on + strand, within Dsui_2750 at 2907.121 kb on - strand, within Dsui_2750 at 2907.428 kb on + strand, within Dsui_2750 at 2907.572 kb on + strand, within Dsui_2750 at 2907.572 kb on + strand, within Dsui_2750 at 2907.663 kb on + strand, within Dsui_2750 at 2907.668 kb on + strand at 2907.671 kb on - strand, within Dsui_2750 at 2907.671 kb on - strand, within Dsui_2750 at 2907.703 kb on - strand, within Dsui_2750 at 2907.786 kb on - strand, within Dsui_2750 at 2907.811 kb on + strand at 2907.902 kb on - strand, within Dsui_2750 at 2907.921 kb on - strand, within Dsui_2750 at 2907.964 kb on + strand at 2908.169 kb on - strand at 2908.169 kb on - strand at 2908.184 kb on - strand at 2908.244 kb on + strand at 2908.295 kb on + strand at 2908.303 kb on - strand at 2908.357 kb on - strand at 2908.466 kb on + strand at 2908.532 kb on - strand, within Dsui_2751 at 2908.662 kb on + strand at 2908.672 kb on - strand, within Dsui_2751 at 2908.866 kb on + strand, within Dsui_2751 at 2908.874 kb on - strand, within Dsui_2751 at 2908.896 kb on - strand, within Dsui_2751 at 2909.048 kb on - strand, within Dsui_2751 at 2909.060 kb on - strand, within Dsui_2751 at 2909.156 kb on - strand, within Dsui_2751 at 2909.156 kb on - strand, within Dsui_2751 at 2909.168 kb on - strand, within Dsui_2751 at 2909.181 kb on - strand, within Dsui_2751
Per-strain Table
Position Strand Gene LocusTag Fraction Anaero. lactate (C), perchlorate electron acceptor remove 2,904,636 - Dsui_2749 0.25 +0.5 2,904,669 + Dsui_2749 0.28 -0.1 2,904,677 - Dsui_2749 0.28 -1.4 2,904,677 - Dsui_2749 0.28 -0.3 2,904,677 - Dsui_2749 0.28 +0.4 2,904,677 - Dsui_2749 0.28 +0.7 2,904,810 - Dsui_2749 0.40 +0.4 2,904,884 - Dsui_2749 0.47 +0.9 2,904,905 + Dsui_2749 0.49 -1.1 2,904,913 - Dsui_2749 0.49 -0.1 2,904,984 - Dsui_2749 0.56 -2.5 2,905,080 + Dsui_2749 0.64 +0.9 2,905,102 + Dsui_2749 0.66 +0.6 2,905,143 - Dsui_2749 0.70 +0.2 2,905,146 + Dsui_2749 0.70 +1.6 2,905,221 - Dsui_2749 0.77 +0.2 2,905,221 - Dsui_2749 0.77 +0.7 2,905,307 + Dsui_2749 0.85 +0.9 2,905,315 - Dsui_2749 0.85 +0.1 2,905,403 - -0.1 2,905,433 + +0.4 2,905,482 + -0.7 2,905,613 + -0.3 2,905,703 - -0.5 2,905,705 + -0.5 2,905,705 + -0.5 2,905,713 - -1.2 2,905,746 + -0.1 2,905,843 - -0.0 2,906,092 - Dsui_2750 0.18 -0.2 2,906,135 - Dsui_2750 0.20 -0.2 2,906,193 - Dsui_2750 0.22 -1.1 2,906,232 - Dsui_2750 0.24 +0.1 2,906,350 + -0.3 2,906,350 + Dsui_2750 0.28 -0.6 2,906,465 + Dsui_2750 0.33 +0.7 2,906,467 - Dsui_2750 0.33 +0.3 2,906,473 - Dsui_2750 0.33 -0.2 2,906,478 - Dsui_2750 0.33 +0.2 2,906,541 - Dsui_2750 0.36 -0.7 2,906,662 + +2.1 2,906,719 - Dsui_2750 0.43 +0.8 2,906,841 - Dsui_2750 0.47 -0.4 2,906,957 - Dsui_2750 0.52 -1.3 2,907,070 + Dsui_2750 0.56 -0.7 2,907,121 - Dsui_2750 0.58 -0.4 2,907,428 + Dsui_2750 0.70 -1.6 2,907,572 + Dsui_2750 0.76 +0.9 2,907,572 + Dsui_2750 0.76 -0.8 2,907,663 + Dsui_2750 0.79 +1.1 2,907,668 + -0.8 2,907,671 - Dsui_2750 0.80 +0.3 2,907,671 - Dsui_2750 0.80 -0.1 2,907,703 - Dsui_2750 0.81 -0.1 2,907,786 - Dsui_2750 0.84 +0.5 2,907,811 + +0.7 2,907,902 - Dsui_2750 0.88 -0.1 2,907,921 - Dsui_2750 0.89 +0.1 2,907,964 + -0.3 2,908,169 - -0.9 2,908,169 - -0.4 2,908,184 - +0.1 2,908,244 + +0.9 2,908,295 + +0.5 2,908,303 - -0.0 2,908,357 - -0.4 2,908,466 + +2.1 2,908,532 - Dsui_2751 0.12 +0.3 2,908,662 + +1.1 2,908,672 - Dsui_2751 0.18 -0.2 2,908,866 + Dsui_2751 0.27 -2.3 2,908,874 - Dsui_2751 0.28 -1.0 2,908,896 - Dsui_2751 0.29 -0.6 2,909,048 - Dsui_2751 0.36 -0.4 2,909,060 - Dsui_2751 0.36 -0.5 2,909,156 - Dsui_2751 0.41 -0.3 2,909,156 - Dsui_2751 0.41 -0.4 2,909,168 - Dsui_2751 0.41 +0.0 2,909,181 - Dsui_2751 0.42 -0.6
Or see this region's nucleotide sequence