Strain Fitness in Dechlorosoma suillum PS around Dsui_2641

Experiment: Anaero. lactate (C), perchlorate electron acceptor

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDsui_2639 and Dsui_2640 are separated by 96 nucleotidesDsui_2640 and Dsui_2641 are separated by 29 nucleotidesDsui_2641 and Dsui_2642 are separated by 13 nucleotides Dsui_2639: Dsui_2639 - putative metal-binding protein, at 2,791,531 to 2,791,971 _2639 Dsui_2640: Dsui_2640 - Cytochrome c, at 2,792,068 to 2,792,730 _2640 Dsui_2641: Dsui_2641 - putative multicopper oxidase, at 2,792,760 to 2,794,169 _2641 Dsui_2642: Dsui_2642 - outer membrane protein, at 2,794,183 to 2,795,605 _2642 Position (kb) 2792 2793 2794 2795Strain fitness (log2 ratio) -2 -1 0 1 2at 2791.773 kb on - strand, within Dsui_2639at 2791.801 kb on - strand, within Dsui_2639at 2791.884 kb on - strand, within Dsui_2639at 2791.928 kb on - strandat 2791.958 kb on - strandat 2791.998 kb on - strandat 2792.011 kb on - strandat 2792.065 kb on + strandat 2792.065 kb on + strandat 2792.073 kb on - strandat 2792.088 kb on + strandat 2792.096 kb on - strandat 2792.096 kb on - strandat 2792.103 kb on - strandat 2792.240 kb on + strand, within Dsui_2640at 2792.256 kb on - strand, within Dsui_2640at 2792.320 kb on + strand, within Dsui_2640at 2792.431 kb on - strand, within Dsui_2640at 2792.436 kb on - strand, within Dsui_2640at 2792.510 kb on - strand, within Dsui_2640at 2792.708 kb on + strandat 2792.754 kb on - strandat 2793.016 kb on - strand, within Dsui_2641at 2793.017 kb on - strand, within Dsui_2641at 2793.072 kb on + strand, within Dsui_2641at 2793.103 kb on - strand, within Dsui_2641at 2793.114 kb on - strand, within Dsui_2641at 2793.175 kb on + strand, within Dsui_2641at 2793.473 kb on + strand, within Dsui_2641at 2793.490 kb on + strand, within Dsui_2641at 2793.497 kb on + strand, within Dsui_2641at 2793.497 kb on + strand, within Dsui_2641at 2793.505 kb on - strand, within Dsui_2641at 2793.539 kb on + strand, within Dsui_2641at 2793.888 kb on - strand, within Dsui_2641at 2793.888 kb on - strand, within Dsui_2641at 2793.987 kb on - strand, within Dsui_2641at 2794.433 kb on + strand, within Dsui_2642at 2794.553 kb on + strandat 2794.563 kb on + strand, within Dsui_2642at 2794.563 kb on + strand, within Dsui_2642at 2794.699 kb on - strand, within Dsui_2642at 2794.774 kb on - strand, within Dsui_2642at 2794.878 kb on - strand, within Dsui_2642at 2794.902 kb on + strand, within Dsui_2642at 2794.910 kb on - strand, within Dsui_2642at 2795.012 kb on - strand, within Dsui_2642

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Anaero. lactate (C), perchlorate electron acceptor
remove
2,791,773 - Dsui_2639 0.55 +0.1
2,791,801 - Dsui_2639 0.61 +0.4
2,791,884 - Dsui_2639 0.80 -0.2
2,791,928 - -1.0
2,791,958 - -1.3
2,791,998 - +1.5
2,792,011 - +0.5
2,792,065 + +0.7
2,792,065 + -0.2
2,792,073 - +0.3
2,792,088 + -0.2
2,792,096 - -0.5
2,792,096 - -1.2
2,792,103 - -0.6
2,792,240 + Dsui_2640 0.26 -0.2
2,792,256 - Dsui_2640 0.28 -0.2
2,792,320 + Dsui_2640 0.38 -1.3
2,792,431 - Dsui_2640 0.55 -0.6
2,792,436 - Dsui_2640 0.56 -0.8
2,792,510 - Dsui_2640 0.67 -0.3
2,792,708 + +0.0
2,792,754 - +2.1
2,793,016 - Dsui_2641 0.18 -1.9
2,793,017 - Dsui_2641 0.18 -0.3
2,793,072 + Dsui_2641 0.22 -0.0
2,793,103 - Dsui_2641 0.24 -2.2
2,793,114 - Dsui_2641 0.25 -0.2
2,793,175 + Dsui_2641 0.29 -1.3
2,793,473 + Dsui_2641 0.51 -1.8
2,793,490 + Dsui_2641 0.52 -0.5
2,793,497 + Dsui_2641 0.52 -0.1
2,793,497 + Dsui_2641 0.52 -0.1
2,793,505 - Dsui_2641 0.53 -0.3
2,793,539 + Dsui_2641 0.55 -0.7
2,793,888 - Dsui_2641 0.80 -0.2
2,793,888 - Dsui_2641 0.80 +0.3
2,793,987 - Dsui_2641 0.87 -0.5
2,794,433 + Dsui_2642 0.18 -1.7
2,794,553 + -0.7
2,794,563 + Dsui_2642 0.27 +0.9
2,794,563 + Dsui_2642 0.27 -0.9
2,794,699 - Dsui_2642 0.36 +1.2
2,794,774 - Dsui_2642 0.42 +0.2
2,794,878 - Dsui_2642 0.49 -1.0
2,794,902 + Dsui_2642 0.51 -0.2
2,794,910 - Dsui_2642 0.51 -0.1
2,795,012 - Dsui_2642 0.58 -1.8

Or see this region's nucleotide sequence