Strain Fitness in Dechlorosoma suillum PS around Dsui_2413

Experiment: Anaero. lactate (C), perchlorate electron acceptor

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDsui_2412 and Dsui_2413 are separated by 33 nucleotidesDsui_2413 and Dsui_2414 are separated by 102 nucleotidesDsui_2414 and Dsui_2415 are separated by 168 nucleotides Dsui_2412: Dsui_2412 - PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein, at 2,563,566 to 2,566,304 _2412 Dsui_2413: Dsui_2413 - DNA repair protein RadA, at 2,566,338 to 2,567,711 _2413 Dsui_2414: Dsui_2414 - hypothetical protein, at 2,567,814 to 2,568,419 _2414 Dsui_2415: Dsui_2415 - putative ABC-type transport system involved in lysophospholipase L1 biosynthesis, permease component, at 2,568,588 to 2,571,089 _2415 Position (kb) 2566 2567 2568Strain fitness (log2 ratio) -1 0 1 2at 2565.352 kb on + strand, within Dsui_2412at 2565.408 kb on + strand, within Dsui_2412at 2565.424 kb on + strandat 2565.523 kb on + strand, within Dsui_2412at 2565.597 kb on + strandat 2565.639 kb on + strand, within Dsui_2412at 2565.670 kb on + strand, within Dsui_2412at 2565.685 kb on + strand, within Dsui_2412at 2565.686 kb on - strandat 2565.793 kb on + strand, within Dsui_2412at 2565.815 kb on + strand, within Dsui_2412at 2565.913 kb on + strand, within Dsui_2412at 2565.913 kb on + strand, within Dsui_2412at 2565.990 kb on - strandat 2566.170 kb on + strandat 2566.232 kb on + strandat 2566.326 kb on - strandat 2566.355 kb on + strandat 2566.436 kb on + strandat 2566.530 kb on + strand, within Dsui_2413at 2566.558 kb on + strand, within Dsui_2413at 2566.576 kb on - strandat 2566.591 kb on - strandat 2566.669 kb on + strand, within Dsui_2413at 2566.908 kb on + strand, within Dsui_2413at 2567.153 kb on + strand, within Dsui_2413at 2567.200 kb on + strand, within Dsui_2413at 2567.355 kb on + strand, within Dsui_2413at 2567.419 kb on + strand, within Dsui_2413at 2567.420 kb on + strand, within Dsui_2413at 2567.716 kb on + strandat 2567.811 kb on + strandat 2567.957 kb on + strandat 2567.965 kb on + strand, within Dsui_2414at 2567.965 kb on + strand, within Dsui_2414at 2567.984 kb on - strandat 2567.984 kb on - strandat 2568.015 kb on + strandat 2568.159 kb on - strandat 2568.219 kb on + strandat 2568.229 kb on + strandat 2568.286 kb on + strandat 2568.418 kb on - strandat 2568.535 kb on + strandat 2568.540 kb on + strandat 2568.540 kb on + strandat 2568.540 kb on + strandat 2568.619 kb on + strandat 2568.651 kb on + strandat 2568.651 kb on + strandat 2568.652 kb on + strandat 2568.680 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Anaero. lactate (C), perchlorate electron acceptor
remove
2,565,352 + Dsui_2412 0.65 +0.8
2,565,408 + Dsui_2412 0.67 +0.3
2,565,424 + +1.0
2,565,523 + Dsui_2412 0.71 -0.6
2,565,597 + -0.0
2,565,639 + Dsui_2412 0.76 -0.0
2,565,670 + Dsui_2412 0.77 +0.5
2,565,685 + Dsui_2412 0.77 -1.2
2,565,686 - +1.0
2,565,793 + Dsui_2412 0.81 -0.0
2,565,815 + Dsui_2412 0.82 -0.5
2,565,913 + Dsui_2412 0.86 -0.2
2,565,913 + Dsui_2412 0.86 -1.6
2,565,990 - +2.0
2,566,170 + -0.0
2,566,232 + +0.4
2,566,326 - +2.0
2,566,355 + +0.9
2,566,436 + +0.2
2,566,530 + Dsui_2413 0.14 -0.9
2,566,558 + Dsui_2413 0.16 +0.3
2,566,576 - -0.0
2,566,591 - +1.0
2,566,669 + Dsui_2413 0.24 +0.4
2,566,908 + Dsui_2413 0.41 +0.3
2,567,153 + Dsui_2413 0.59 +0.4
2,567,200 + Dsui_2413 0.63 +0.6
2,567,355 + Dsui_2413 0.74 +0.5
2,567,419 + Dsui_2413 0.79 +0.3
2,567,420 + Dsui_2413 0.79 -0.2
2,567,716 + +0.2
2,567,811 + +0.4
2,567,957 + +0.4
2,567,965 + Dsui_2414 0.25 +0.4
2,567,965 + Dsui_2414 0.25 -0.2
2,567,984 - +2.0
2,567,984 - +0.4
2,568,015 + +1.0
2,568,159 - -0.0
2,568,219 + +2.0
2,568,229 + +1.4
2,568,286 + +1.0
2,568,418 - +0.7
2,568,535 + +0.4
2,568,540 + +1.4
2,568,540 + +2.2
2,568,540 + -0.7
2,568,619 + +0.8
2,568,651 + +0.5
2,568,651 + -0.0
2,568,652 + +0.7
2,568,680 + -0.7

Or see this region's nucleotide sequence