Strain Fitness in Dechlorosoma suillum PS around Dsui_2309

Experiment: Anaero. lactate (C), perchlorate electron acceptor

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2307 and Dsui_2308 are separated by 16 nucleotidesDsui_2308 and Dsui_2309 overlap by 14 nucleotidesDsui_2309 and Dsui_2310 are separated by 37 nucleotides Dsui_2307: Dsui_2307 - putative ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component, at 2,463,555 to 2,464,214 _2307 Dsui_2308: Dsui_2308 - lysophospholipase L1-like esterase, at 2,464,231 to 2,464,854 _2308 Dsui_2309: Dsui_2309 - selenium donor protein, at 2,464,841 to 2,465,887 _2309 Dsui_2310: Dsui_2310 - tRNA 2-selenouridine synthase, at 2,465,925 to 2,467,013 _2310 Position (kb) 2464 2465 2466Strain fitness (log2 ratio) -2 -1 0 1 2at 2463.898 kb on - strand, within Dsui_2307at 2464.052 kb on + strandat 2464.060 kb on - strand, within Dsui_2307at 2464.130 kb on + strand, within Dsui_2307at 2464.132 kb on - strand, within Dsui_2307at 2464.169 kb on - strandat 2464.189 kb on + strandat 2464.189 kb on + strandat 2464.194 kb on + strandat 2464.197 kb on - strandat 2464.197 kb on - strandat 2464.202 kb on - strandat 2464.231 kb on - strandat 2464.302 kb on + strand, within Dsui_2308at 2464.304 kb on - strand, within Dsui_2308at 2464.315 kb on - strand, within Dsui_2308at 2464.467 kb on - strand, within Dsui_2308at 2464.579 kb on + strand, within Dsui_2308at 2464.584 kb on + strand, within Dsui_2308at 2464.616 kb on - strand, within Dsui_2308at 2464.616 kb on - strand, within Dsui_2308at 2464.709 kb on - strand, within Dsui_2308at 2464.766 kb on - strand, within Dsui_2308at 2464.787 kb on - strand, within Dsui_2308at 2464.834 kb on + strandat 2464.970 kb on - strand, within Dsui_2309at 2465.003 kb on - strand, within Dsui_2309at 2465.167 kb on - strand, within Dsui_2309at 2465.327 kb on - strand, within Dsui_2309at 2465.331 kb on - strand, within Dsui_2309at 2465.358 kb on + strand, within Dsui_2309at 2465.366 kb on - strand, within Dsui_2309at 2465.394 kb on - strand, within Dsui_2309at 2465.437 kb on - strand, within Dsui_2309at 2465.466 kb on + strand, within Dsui_2309at 2465.726 kb on - strand, within Dsui_2309at 2465.807 kb on + strandat 2465.913 kb on - strandat 2466.148 kb on - strandat 2466.156 kb on + strand, within Dsui_2310at 2466.166 kb on + strand, within Dsui_2310at 2466.319 kb on + strand, within Dsui_2310at 2466.343 kb on + strand, within Dsui_2310at 2466.389 kb on + strand, within Dsui_2310at 2466.528 kb on + strand, within Dsui_2310at 2466.647 kb on + strand, within Dsui_2310at 2466.673 kb on + strand, within Dsui_2310at 2466.827 kb on - strand, within Dsui_2310at 2466.852 kb on + strand, within Dsui_2310

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaero. lactate (C), perchlorate electron acceptor
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2,463,898 - Dsui_2307 0.52 -0.5
2,464,052 + +1.9
2,464,060 - Dsui_2307 0.77 -0.2
2,464,130 + Dsui_2307 0.87 -0.5
2,464,132 - Dsui_2307 0.87 +0.3
2,464,169 - +0.3
2,464,189 + -0.7
2,464,189 + -0.8
2,464,194 + +0.0
2,464,197 - -0.2
2,464,197 - +0.0
2,464,202 - -0.0
2,464,231 - +0.3
2,464,302 + Dsui_2308 0.11 +0.1
2,464,304 - Dsui_2308 0.12 -1.1
2,464,315 - Dsui_2308 0.13 -1.0
2,464,467 - Dsui_2308 0.38 +0.1
2,464,579 + Dsui_2308 0.56 +0.4
2,464,584 + Dsui_2308 0.57 -0.1
2,464,616 - Dsui_2308 0.62 +0.1
2,464,616 - Dsui_2308 0.62 -0.1
2,464,709 - Dsui_2308 0.77 -0.8
2,464,766 - Dsui_2308 0.86 +0.1
2,464,787 - Dsui_2308 0.89 -0.6
2,464,834 + -0.3
2,464,970 - Dsui_2309 0.12 +0.4
2,465,003 - Dsui_2309 0.15 -0.2
2,465,167 - Dsui_2309 0.31 +0.0
2,465,327 - Dsui_2309 0.46 -0.9
2,465,331 - Dsui_2309 0.47 -0.6
2,465,358 + Dsui_2309 0.49 +0.6
2,465,366 - Dsui_2309 0.50 -0.6
2,465,394 - Dsui_2309 0.53 -0.7
2,465,437 - Dsui_2309 0.57 -1.5
2,465,466 + Dsui_2309 0.60 +0.3
2,465,726 - Dsui_2309 0.85 -0.6
2,465,807 + -0.1
2,465,913 - -0.2
2,466,148 - +0.3
2,466,156 + Dsui_2310 0.21 -0.2
2,466,166 + Dsui_2310 0.22 -1.9
2,466,319 + Dsui_2310 0.36 -0.6
2,466,343 + Dsui_2310 0.38 +0.0
2,466,389 + Dsui_2310 0.43 -0.2
2,466,528 + Dsui_2310 0.55 +0.8
2,466,647 + Dsui_2310 0.66 +0.4
2,466,673 + Dsui_2310 0.69 +0.8
2,466,827 - Dsui_2310 0.83 +1.3
2,466,852 + Dsui_2310 0.85 -1.2

Or see this region's nucleotide sequence