Strain Fitness in Dechlorosoma suillum PS around Dsui_2198

Experiment: Anaero. lactate (C), perchlorate electron acceptor

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2197 and Dsui_2198 are separated by 114 nucleotidesDsui_2198 and Dsui_2199 are separated by 161 nucleotidesDsui_2199 and Dsui_2200 are separated by 28 nucleotidesDsui_2200 and Dsui_2201 are separated by 25 nucleotidesDsui_2201 and Dsui_2202 are separated by 68 nucleotides Dsui_2197: Dsui_2197 - endopeptidase Clp ATP-binding regulatory subunit ClpX, at 2,332,683 to 2,333,957 _2197 Dsui_2198: Dsui_2198 - ATP-dependent protease La, at 2,334,072 to 2,336,489 _2198 Dsui_2199: Dsui_2199 - bacterial nucleoid DNA-binding protein, at 2,336,651 to 2,336,923 _2199 Dsui_2200: Dsui_2200 - tRNA-Val, at 2,336,952 to 2,337,027 _2200 Dsui_2201: Dsui_2201 - tRNA-Asp, at 2,337,053 to 2,337,129 _2201 Dsui_2202: Dsui_2202 - parvulin-like peptidyl-prolyl isomerase, at 2,337,198 to 2,339,090 _2202 Position (kb) 2334 2335 2336 2337Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5at 2333.080 kb on + strand, within Dsui_2197at 2333.087 kb on - strand, within Dsui_2197at 2333.122 kb on - strand, within Dsui_2197at 2333.132 kb on + strand, within Dsui_2197at 2333.281 kb on - strand, within Dsui_2197at 2333.321 kb on + strand, within Dsui_2197at 2333.321 kb on + strand, within Dsui_2197at 2333.321 kb on + strand, within Dsui_2197at 2333.328 kb on - strand, within Dsui_2197at 2333.357 kb on + strand, within Dsui_2197at 2333.446 kb on + strand, within Dsui_2197at 2333.505 kb on - strandat 2333.510 kb on + strand, within Dsui_2197at 2333.541 kb on + strand, within Dsui_2197at 2333.541 kb on + strand, within Dsui_2197at 2333.560 kb on + strand, within Dsui_2197at 2333.636 kb on + strand, within Dsui_2197at 2333.644 kb on - strand, within Dsui_2197at 2333.695 kb on + strand, within Dsui_2197at 2333.705 kb on - strand, within Dsui_2197at 2333.718 kb on - strand, within Dsui_2197at 2333.825 kb on + strand, within Dsui_2197at 2333.833 kb on + strandat 2333.918 kb on + strandat 2333.918 kb on + strandat 2333.931 kb on - strandat 2333.933 kb on + strandat 2333.933 kb on + strandat 2334.002 kb on + strandat 2334.038 kb on + strandat 2334.038 kb on + strandat 2334.046 kb on - strandat 2334.071 kb on - strandat 2334.079 kb on + strandat 2334.108 kb on + strandat 2334.108 kb on + strandat 2334.628 kb on + strand, within Dsui_2198at 2334.745 kb on + strand, within Dsui_2198at 2334.755 kb on + strand, within Dsui_2198at 2334.779 kb on + strand, within Dsui_2198at 2334.779 kb on + strand, within Dsui_2198at 2334.779 kb on + strand, within Dsui_2198at 2334.779 kb on + strand, within Dsui_2198at 2334.787 kb on - strandat 2334.908 kb on + strand, within Dsui_2198at 2334.977 kb on - strandat 2335.011 kb on + strand, within Dsui_2198at 2335.053 kb on + strand, within Dsui_2198at 2335.115 kb on + strand, within Dsui_2198at 2335.139 kb on + strand, within Dsui_2198at 2335.168 kb on + strand, within Dsui_2198at 2335.339 kb on + strand, within Dsui_2198at 2335.422 kb on + strand, within Dsui_2198at 2335.579 kb on - strandat 2335.740 kb on - strandat 2335.772 kb on + strand, within Dsui_2198at 2335.825 kb on + strand, within Dsui_2198at 2335.912 kb on + strand, within Dsui_2198at 2335.975 kb on - strandat 2336.285 kb on - strandat 2336.305 kb on - strandat 2336.607 kb on + strandat 2336.630 kb on + strandat 2336.637 kb on - strandat 2336.772 kb on + strand, within Dsui_2199at 2336.900 kb on + strandat 2337.048 kb on + strandat 2337.351 kb on - strandat 2337.365 kb on + strandat 2337.365 kb on + strandat 2337.365 kb on + strandat 2337.397 kb on - strand, within Dsui_2202at 2337.397 kb on - strandat 2337.397 kb on - strand, within Dsui_2202at 2337.400 kb on + strand, within Dsui_2202at 2337.416 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaero. lactate (C), perchlorate electron acceptor
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2,333,080 + Dsui_2197 0.31 +0.1
2,333,087 - Dsui_2197 0.32 +0.1
2,333,122 - Dsui_2197 0.34 -0.4
2,333,132 + Dsui_2197 0.35 +1.7
2,333,281 - Dsui_2197 0.47 +0.0
2,333,321 + Dsui_2197 0.50 +0.1
2,333,321 + Dsui_2197 0.50 +0.4
2,333,321 + Dsui_2197 0.50 +0.8
2,333,328 - Dsui_2197 0.51 +0.9
2,333,357 + Dsui_2197 0.53 +0.6
2,333,446 + Dsui_2197 0.60 +0.3
2,333,505 - +1.0
2,333,510 + Dsui_2197 0.65 +0.2
2,333,541 + Dsui_2197 0.67 +0.3
2,333,541 + Dsui_2197 0.67 +1.2
2,333,560 + Dsui_2197 0.69 -0.6
2,333,636 + Dsui_2197 0.75 -0.3
2,333,644 - Dsui_2197 0.75 +0.2
2,333,695 + Dsui_2197 0.79 +0.7
2,333,705 - Dsui_2197 0.80 +0.9
2,333,718 - Dsui_2197 0.81 -1.2
2,333,825 + Dsui_2197 0.90 +0.7
2,333,833 + +1.5
2,333,918 + -0.0
2,333,918 + +1.1
2,333,931 - +2.8
2,333,933 + +0.4
2,333,933 + +0.1
2,334,002 + +2.7
2,334,038 + +5.0
2,334,038 + +5.0
2,334,046 - +1.3
2,334,071 - +4.3
2,334,079 + +3.5
2,334,108 + +4.5
2,334,108 + +3.1
2,334,628 + Dsui_2198 0.23 +3.8
2,334,745 + Dsui_2198 0.28 +3.5
2,334,755 + Dsui_2198 0.28 +3.9
2,334,779 + Dsui_2198 0.29 +4.4
2,334,779 + Dsui_2198 0.29 +4.2
2,334,779 + Dsui_2198 0.29 +3.9
2,334,779 + Dsui_2198 0.29 +4.3
2,334,787 - +3.1
2,334,908 + Dsui_2198 0.35 +3.9
2,334,977 - +2.0
2,335,011 + Dsui_2198 0.39 +4.1
2,335,053 + Dsui_2198 0.41 +5.1
2,335,115 + Dsui_2198 0.43 +4.4
2,335,139 + Dsui_2198 0.44 +4.6
2,335,168 + Dsui_2198 0.45 +3.8
2,335,339 + Dsui_2198 0.52 +3.7
2,335,422 + Dsui_2198 0.56 +4.9
2,335,579 - +3.3
2,335,740 - +2.7
2,335,772 + Dsui_2198 0.70 +4.0
2,335,825 + Dsui_2198 0.72 +3.1
2,335,912 + Dsui_2198 0.76 +2.5
2,335,975 - +4.0
2,336,285 - +3.8
2,336,305 - +3.6
2,336,607 + -0.2
2,336,630 + -0.3
2,336,637 - -2.9
2,336,772 + Dsui_2199 0.44 +0.3
2,336,900 + +0.1
2,337,048 + -1.4
2,337,351 - -0.6
2,337,365 + -0.0
2,337,365 + -0.4
2,337,365 + -0.1
2,337,397 - Dsui_2202 0.11 -0.0
2,337,397 - +2.0
2,337,397 - Dsui_2202 0.11 -0.3
2,337,400 + Dsui_2202 0.11 -0.4
2,337,416 - +0.4

Or see this region's nucleotide sequence