Experiment: Anaero. lactate (C), perchlorate electron acceptor
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2197 and Dsui_2198 are separated by 114 nucleotides Dsui_2198 and Dsui_2199 are separated by 161 nucleotides Dsui_2199 and Dsui_2200 are separated by 28 nucleotides Dsui_2200 and Dsui_2201 are separated by 25 nucleotides Dsui_2201 and Dsui_2202 are separated by 68 nucleotides
Dsui_2197: Dsui_2197 - endopeptidase Clp ATP-binding regulatory subunit ClpX, at 2,332,683 to 2,333,957
_2197
Dsui_2198: Dsui_2198 - ATP-dependent protease La, at 2,334,072 to 2,336,489
_2198
Dsui_2199: Dsui_2199 - bacterial nucleoid DNA-binding protein, at 2,336,651 to 2,336,923
_2199
Dsui_2200: Dsui_2200 - tRNA-Val, at 2,336,952 to 2,337,027
_2200
Dsui_2201: Dsui_2201 - tRNA-Asp, at 2,337,053 to 2,337,129
_2201
Dsui_2202: Dsui_2202 - parvulin-like peptidyl-prolyl isomerase, at 2,337,198 to 2,339,090
_2202
Position (kb)
2334
2335
2336
2337 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4
5 at 2333.080 kb on + strand, within Dsui_2197 at 2333.087 kb on - strand, within Dsui_2197 at 2333.122 kb on - strand, within Dsui_2197 at 2333.132 kb on + strand, within Dsui_2197 at 2333.281 kb on - strand, within Dsui_2197 at 2333.321 kb on + strand, within Dsui_2197 at 2333.321 kb on + strand, within Dsui_2197 at 2333.321 kb on + strand, within Dsui_2197 at 2333.328 kb on - strand, within Dsui_2197 at 2333.357 kb on + strand, within Dsui_2197 at 2333.446 kb on + strand, within Dsui_2197 at 2333.505 kb on - strand at 2333.510 kb on + strand, within Dsui_2197 at 2333.541 kb on + strand, within Dsui_2197 at 2333.541 kb on + strand, within Dsui_2197 at 2333.560 kb on + strand, within Dsui_2197 at 2333.636 kb on + strand, within Dsui_2197 at 2333.644 kb on - strand, within Dsui_2197 at 2333.695 kb on + strand, within Dsui_2197 at 2333.705 kb on - strand, within Dsui_2197 at 2333.718 kb on - strand, within Dsui_2197 at 2333.825 kb on + strand, within Dsui_2197 at 2333.833 kb on + strand at 2333.918 kb on + strand at 2333.918 kb on + strand at 2333.931 kb on - strand at 2333.933 kb on + strand at 2333.933 kb on + strand at 2334.002 kb on + strand at 2334.038 kb on + strand at 2334.038 kb on + strand at 2334.046 kb on - strand at 2334.071 kb on - strand at 2334.079 kb on + strand at 2334.108 kb on + strand at 2334.108 kb on + strand at 2334.628 kb on + strand, within Dsui_2198 at 2334.745 kb on + strand, within Dsui_2198 at 2334.755 kb on + strand, within Dsui_2198 at 2334.779 kb on + strand, within Dsui_2198 at 2334.779 kb on + strand, within Dsui_2198 at 2334.779 kb on + strand, within Dsui_2198 at 2334.779 kb on + strand, within Dsui_2198 at 2334.787 kb on - strand at 2334.908 kb on + strand, within Dsui_2198 at 2334.977 kb on - strand at 2335.011 kb on + strand, within Dsui_2198 at 2335.053 kb on + strand, within Dsui_2198 at 2335.115 kb on + strand, within Dsui_2198 at 2335.139 kb on + strand, within Dsui_2198 at 2335.168 kb on + strand, within Dsui_2198 at 2335.339 kb on + strand, within Dsui_2198 at 2335.422 kb on + strand, within Dsui_2198 at 2335.579 kb on - strand at 2335.740 kb on - strand at 2335.772 kb on + strand, within Dsui_2198 at 2335.825 kb on + strand, within Dsui_2198 at 2335.912 kb on + strand, within Dsui_2198 at 2335.975 kb on - strand at 2336.285 kb on - strand at 2336.305 kb on - strand at 2336.607 kb on + strand at 2336.630 kb on + strand at 2336.637 kb on - strand at 2336.772 kb on + strand, within Dsui_2199 at 2336.900 kb on + strand at 2337.048 kb on + strand at 2337.351 kb on - strand at 2337.365 kb on + strand at 2337.365 kb on + strand at 2337.365 kb on + strand at 2337.397 kb on - strand, within Dsui_2202 at 2337.397 kb on - strand at 2337.397 kb on - strand, within Dsui_2202 at 2337.400 kb on + strand, within Dsui_2202 at 2337.416 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Anaero. lactate (C), perchlorate electron acceptor remove 2,333,080 + Dsui_2197 0.31 +0.1 2,333,087 - Dsui_2197 0.32 +0.1 2,333,122 - Dsui_2197 0.34 -0.4 2,333,132 + Dsui_2197 0.35 +1.7 2,333,281 - Dsui_2197 0.47 +0.0 2,333,321 + Dsui_2197 0.50 +0.1 2,333,321 + Dsui_2197 0.50 +0.4 2,333,321 + Dsui_2197 0.50 +0.8 2,333,328 - Dsui_2197 0.51 +0.9 2,333,357 + Dsui_2197 0.53 +0.6 2,333,446 + Dsui_2197 0.60 +0.3 2,333,505 - +1.0 2,333,510 + Dsui_2197 0.65 +0.2 2,333,541 + Dsui_2197 0.67 +0.3 2,333,541 + Dsui_2197 0.67 +1.2 2,333,560 + Dsui_2197 0.69 -0.6 2,333,636 + Dsui_2197 0.75 -0.3 2,333,644 - Dsui_2197 0.75 +0.2 2,333,695 + Dsui_2197 0.79 +0.7 2,333,705 - Dsui_2197 0.80 +0.9 2,333,718 - Dsui_2197 0.81 -1.2 2,333,825 + Dsui_2197 0.90 +0.7 2,333,833 + +1.5 2,333,918 + -0.0 2,333,918 + +1.1 2,333,931 - +2.8 2,333,933 + +0.4 2,333,933 + +0.1 2,334,002 + +2.7 2,334,038 + +5.0 2,334,038 + +5.0 2,334,046 - +1.3 2,334,071 - +4.3 2,334,079 + +3.5 2,334,108 + +4.5 2,334,108 + +3.1 2,334,628 + Dsui_2198 0.23 +3.8 2,334,745 + Dsui_2198 0.28 +3.5 2,334,755 + Dsui_2198 0.28 +3.9 2,334,779 + Dsui_2198 0.29 +4.4 2,334,779 + Dsui_2198 0.29 +4.2 2,334,779 + Dsui_2198 0.29 +3.9 2,334,779 + Dsui_2198 0.29 +4.3 2,334,787 - +3.1 2,334,908 + Dsui_2198 0.35 +3.9 2,334,977 - +2.0 2,335,011 + Dsui_2198 0.39 +4.1 2,335,053 + Dsui_2198 0.41 +5.1 2,335,115 + Dsui_2198 0.43 +4.4 2,335,139 + Dsui_2198 0.44 +4.6 2,335,168 + Dsui_2198 0.45 +3.8 2,335,339 + Dsui_2198 0.52 +3.7 2,335,422 + Dsui_2198 0.56 +4.9 2,335,579 - +3.3 2,335,740 - +2.7 2,335,772 + Dsui_2198 0.70 +4.0 2,335,825 + Dsui_2198 0.72 +3.1 2,335,912 + Dsui_2198 0.76 +2.5 2,335,975 - +4.0 2,336,285 - +3.8 2,336,305 - +3.6 2,336,607 + -0.2 2,336,630 + -0.3 2,336,637 - -2.9 2,336,772 + Dsui_2199 0.44 +0.3 2,336,900 + +0.1 2,337,048 + -1.4 2,337,351 - -0.6 2,337,365 + -0.0 2,337,365 + -0.4 2,337,365 + -0.1 2,337,397 - Dsui_2202 0.11 -0.0 2,337,397 - +2.0 2,337,397 - Dsui_2202 0.11 -0.3 2,337,400 + Dsui_2202 0.11 -0.4 2,337,416 - +0.4
Or see this region's nucleotide sequence