Experiment: Anaero. lactate (C), perchlorate electron acceptor
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2185 and Dsui_2186 are separated by 185 nucleotides Dsui_2186 and Dsui_2187 are separated by 70 nucleotides Dsui_2187 and Dsui_2188 are separated by 320 nucleotides Dsui_2188 and Dsui_2189 are separated by 145 nucleotides
Dsui_2185: Dsui_2185 - DNA-3-methyladenine glycosylase I, at 2,320,354 to 2,320,926
_2185
Dsui_2186: Dsui_2186 - Protein of unknown function (DUF3567), at 2,321,112 to 2,321,345
_2186
Dsui_2187: Dsui_2187 - acyl-CoA synthetase/AMP-acid ligase, at 2,321,416 to 2,323,113
_2187
Dsui_2188: Dsui_2188 - Protein of unknown function (DUF3460), at 2,323,434 to 2,323,625
_2188
Dsui_2189: Dsui_2189 - acyl-CoA synthetase (NDP forming), at 2,323,771 to 2,326,461
_2189
Position (kb)
2321
2322
2323
2324 Strain fitness (log2 ratio)
-1
0
1
2
3 at 2320.425 kb on + strand, within Dsui_2185 at 2320.477 kb on - strand at 2320.619 kb on - strand, within Dsui_2185 at 2320.650 kb on + strand at 2320.697 kb on + strand at 2320.784 kb on + strand, within Dsui_2185 at 2320.901 kb on - strand at 2320.978 kb on + strand at 2321.011 kb on + strand at 2321.018 kb on - strand at 2321.045 kb on - strand at 2321.155 kb on + strand, within Dsui_2186 at 2321.317 kb on + strand, within Dsui_2186 at 2321.353 kb on - strand at 2321.435 kb on - strand at 2321.534 kb on + strand at 2321.542 kb on - strand at 2321.542 kb on - strand at 2321.660 kb on - strand at 2321.833 kb on - strand at 2321.852 kb on + strand at 2322.053 kb on - strand, within Dsui_2187 at 2322.108 kb on + strand, within Dsui_2187 at 2322.112 kb on - strand at 2322.161 kb on + strand, within Dsui_2187 at 2322.361 kb on + strand at 2322.417 kb on + strand, within Dsui_2187 at 2322.437 kb on + strand, within Dsui_2187 at 2322.463 kb on + strand at 2322.471 kb on - strand at 2322.782 kb on - strand at 2322.804 kb on + strand, within Dsui_2187 at 2322.850 kb on - strand, within Dsui_2187 at 2322.906 kb on - strand at 2323.017 kb on + strand at 2323.034 kb on + strand at 2323.048 kb on + strand at 2323.096 kb on + strand at 2323.176 kb on - strand at 2323.329 kb on + strand at 2323.431 kb on + strand at 2323.450 kb on - strand at 2323.457 kb on + strand, within Dsui_2188 at 2323.547 kb on + strand, within Dsui_2188 at 2323.587 kb on + strand, within Dsui_2188 at 2323.595 kb on + strand, within Dsui_2188 at 2323.619 kb on - strand at 2323.640 kb on + strand at 2323.669 kb on + strand at 2323.669 kb on - strand at 2323.749 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Anaero. lactate (C), perchlorate electron acceptor remove 2,320,425 + Dsui_2185 0.12 -0.0 2,320,477 - +2.0 2,320,619 - Dsui_2185 0.46 -0.1 2,320,650 + +0.4 2,320,697 + -0.6 2,320,784 + Dsui_2185 0.75 -0.0 2,320,901 - -0.0 2,320,978 + +2.0 2,321,011 + -0.0 2,321,018 - +0.4 2,321,045 - +1.0 2,321,155 + Dsui_2186 0.18 +0.7 2,321,317 + Dsui_2186 0.88 +0.2 2,321,353 - +0.7 2,321,435 - -0.0 2,321,534 + +2.3 2,321,542 - -0.2 2,321,542 - -0.1 2,321,660 - -0.3 2,321,833 - -0.0 2,321,852 + +1.0 2,322,053 - Dsui_2187 0.38 -0.3 2,322,108 + Dsui_2187 0.41 +0.9 2,322,112 - +1.0 2,322,161 + Dsui_2187 0.44 +0.7 2,322,361 + +2.0 2,322,417 + Dsui_2187 0.59 +0.8 2,322,437 + Dsui_2187 0.60 +0.7 2,322,463 + -0.8 2,322,471 - +1.4 2,322,782 - +3.0 2,322,804 + Dsui_2187 0.82 +1.4 2,322,850 - Dsui_2187 0.84 -1.4 2,322,906 - +0.4 2,323,017 + +0.6 2,323,034 + -0.0 2,323,048 + +1.2 2,323,096 + +1.0 2,323,176 - +0.4 2,323,329 + +0.4 2,323,431 + +0.1 2,323,450 - +1.4 2,323,457 + Dsui_2188 0.12 +0.3 2,323,547 + Dsui_2188 0.59 -0.1 2,323,587 + Dsui_2188 0.80 +0.1 2,323,595 + Dsui_2188 0.84 +0.8 2,323,619 - +0.7 2,323,640 + +0.3 2,323,669 + +0.5 2,323,669 - -0.6 2,323,749 + -0.2
Or see this region's nucleotide sequence