Strain Fitness in Dechlorosoma suillum PS around Dsui_2170

Experiment: Anaero. lactate (C), perchlorate electron acceptor

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2168 and Dsui_2169 are separated by 71 nucleotidesDsui_2169 and Dsui_2170 overlap by 4 nucleotidesDsui_2170 and Dsui_2171 overlap by 4 nucleotidesDsui_2171 and Dsui_2172 are separated by 37 nucleotides Dsui_2168: Dsui_2168 - putative hydrolase of alpha/beta superfamily, at 2,305,254 to 2,306,219 _2168 Dsui_2169: Dsui_2169 - hypothetical protein, at 2,306,291 to 2,306,572 _2169 Dsui_2170: Dsui_2170 - putative iron-regulated membrane protein, at 2,306,569 to 2,308,077 _2170 Dsui_2171: Dsui_2171 - Protein of unknown function (DUF3325), at 2,308,074 to 2,308,430 _2171 Dsui_2172: Dsui_2172 - transcriptional regulator, at 2,308,468 to 2,308,944 _2172 Position (kb) 2306 2307 2308 2309Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2305.596 kb on - strandat 2305.687 kb on - strandat 2306.214 kb on + strandat 2306.305 kb on + strandat 2306.407 kb on - strandat 2306.500 kb on + strandat 2306.838 kb on - strandat 2306.883 kb on - strandat 2306.938 kb on + strand, within Dsui_2170at 2306.963 kb on + strandat 2307.021 kb on + strandat 2307.091 kb on - strandat 2307.109 kb on - strand, within Dsui_2170at 2307.109 kb on - strandat 2307.470 kb on + strandat 2307.470 kb on + strandat 2307.470 kb on + strandat 2307.532 kb on + strandat 2307.594 kb on + strandat 2307.891 kb on + strand, within Dsui_2170at 2308.009 kb on + strandat 2308.017 kb on - strandat 2308.113 kb on - strandat 2308.129 kb on + strand, within Dsui_2171at 2308.135 kb on + strandat 2308.392 kb on + strandat 2308.409 kb on - strandat 2308.594 kb on + strand, within Dsui_2172at 2308.594 kb on + strand, within Dsui_2172at 2308.849 kb on + strand, within Dsui_2172at 2308.957 kb on + strandat 2308.970 kb on + strandat 2309.060 kb on + strandat 2309.060 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaero. lactate (C), perchlorate electron acceptor
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2,305,596 - +2.0
2,305,687 - -0.0
2,306,214 + +3.0
2,306,305 + +1.0
2,306,407 - +3.0
2,306,500 + +1.0
2,306,838 - +0.4
2,306,883 - +1.0
2,306,938 + Dsui_2170 0.24 -0.1
2,306,963 + +1.0
2,307,021 + +1.0
2,307,091 - -0.3
2,307,109 - Dsui_2170 0.36 -2.2
2,307,109 - +2.0
2,307,470 + +2.0
2,307,470 + -0.0
2,307,470 + +1.0
2,307,532 + +0.7
2,307,594 + +2.0
2,307,891 + Dsui_2170 0.88 -1.8
2,308,009 + +0.4
2,308,017 - +1.0
2,308,113 - +2.0
2,308,129 + Dsui_2171 0.15 +0.1
2,308,135 + +1.0
2,308,392 + +2.0
2,308,409 - +1.0
2,308,594 + Dsui_2172 0.26 +0.4
2,308,594 + Dsui_2172 0.26 +0.7
2,308,849 + Dsui_2172 0.80 -0.3
2,308,957 + +0.1
2,308,970 + -0.0
2,309,060 + -0.6
2,309,060 + +1.0

Or see this region's nucleotide sequence