Strain Fitness in Dechlorosoma suillum PS around Dsui_2108

Experiment: Anaero. lactate (C), perchlorate electron acceptor

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2107 and Dsui_2108 are separated by 25 nucleotidesDsui_2108 and Dsui_2110 are separated by 542 nucleotides Dsui_2107: Dsui_2107 - hypothetical protein, at 2,230,445 to 2,231,428 _2107 Dsui_2108: Dsui_2108 - superfamily II helicase, at 2,231,454 to 2,234,183 _2108 Dsui_2110: Dsui_2110 - transposase, at 2,234,726 to 2,235,715 _2110 Position (kb) 2231 2232 2233 2234 2235Strain fitness (log2 ratio) -2 -1 0 1 2at 2230.460 kb on - strandat 2230.460 kb on - strandat 2230.460 kb on - strandat 2230.460 kb on - strandat 2230.460 kb on - strandat 2230.602 kb on - strand, within Dsui_2107at 2230.621 kb on + strandat 2230.657 kb on - strand, within Dsui_2107at 2230.706 kb on - strand, within Dsui_2107at 2230.710 kb on - strand, within Dsui_2107at 2230.766 kb on - strand, within Dsui_2107at 2230.813 kb on - strand, within Dsui_2107at 2230.875 kb on - strand, within Dsui_2107at 2230.890 kb on - strand, within Dsui_2107at 2230.913 kb on + strand, within Dsui_2107at 2230.957 kb on - strand, within Dsui_2107at 2230.989 kb on + strand, within Dsui_2107at 2230.989 kb on + strandat 2230.997 kb on - strand, within Dsui_2107at 2231.008 kb on + strandat 2231.132 kb on - strand, within Dsui_2107at 2231.139 kb on - strand, within Dsui_2107at 2231.163 kb on - strand, within Dsui_2107at 2231.192 kb on - strand, within Dsui_2107at 2231.238 kb on - strand, within Dsui_2107at 2231.248 kb on - strand, within Dsui_2107at 2231.268 kb on - strand, within Dsui_2107at 2231.297 kb on - strand, within Dsui_2107at 2231.297 kb on - strand, within Dsui_2107at 2231.297 kb on - strand, within Dsui_2107at 2231.297 kb on - strand, within Dsui_2107at 2231.297 kb on - strand, within Dsui_2107at 2231.310 kb on - strand, within Dsui_2107at 2231.371 kb on - strandat 2231.381 kb on + strandat 2231.389 kb on - strandat 2231.389 kb on - strandat 2231.392 kb on + strandat 2231.476 kb on - strandat 2231.512 kb on - strandat 2231.589 kb on + strandat 2231.600 kb on + strandat 2231.661 kb on - strandat 2231.848 kb on + strand, within Dsui_2108at 2231.865 kb on - strand, within Dsui_2108at 2231.964 kb on - strand, within Dsui_2108at 2232.011 kb on - strand, within Dsui_2108at 2232.013 kb on + strand, within Dsui_2108at 2232.127 kb on - strandat 2232.476 kb on + strand, within Dsui_2108at 2232.532 kb on + strand, within Dsui_2108at 2232.532 kb on + strand, within Dsui_2108at 2232.540 kb on - strand, within Dsui_2108at 2232.540 kb on - strand, within Dsui_2108at 2232.559 kb on + strand, within Dsui_2108at 2232.564 kb on + strand, within Dsui_2108at 2232.602 kb on + strand, within Dsui_2108at 2232.681 kb on + strand, within Dsui_2108at 2232.684 kb on - strand, within Dsui_2108at 2232.725 kb on + strand, within Dsui_2108at 2232.819 kb on - strand, within Dsui_2108at 2232.853 kb on - strand, within Dsui_2108at 2232.855 kb on + strand, within Dsui_2108at 2232.863 kb on - strand, within Dsui_2108at 2232.864 kb on - strand, within Dsui_2108at 2232.866 kb on + strand, within Dsui_2108at 2232.874 kb on - strand, within Dsui_2108at 2232.936 kb on - strand, within Dsui_2108at 2233.063 kb on - strand, within Dsui_2108at 2233.283 kb on - strand, within Dsui_2108at 2233.423 kb on - strand, within Dsui_2108at 2233.464 kb on - strand, within Dsui_2108at 2233.530 kb on + strand, within Dsui_2108at 2233.593 kb on + strand, within Dsui_2108at 2233.681 kb on - strand, within Dsui_2108at 2233.686 kb on + strand, within Dsui_2108at 2233.754 kb on + strand, within Dsui_2108at 2233.773 kb on - strand, within Dsui_2108at 2233.780 kb on + strand, within Dsui_2108at 2233.950 kb on - strandat 2234.038 kb on - strandat 2234.129 kb on - strandat 2234.168 kb on + strandat 2234.216 kb on - strandat 2234.348 kb on - strandat 2234.386 kb on + strandat 2234.439 kb on + strandat 2234.452 kb on + strandat 2234.499 kb on - strandat 2234.501 kb on + strandat 2234.547 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaero. lactate (C), perchlorate electron acceptor
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2,230,460 - +0.3
2,230,460 - -0.2
2,230,460 - +0.5
2,230,460 - -0.6
2,230,460 - -0.4
2,230,602 - Dsui_2107 0.16 +0.6
2,230,621 + -0.0
2,230,657 - Dsui_2107 0.22 +0.1
2,230,706 - Dsui_2107 0.27 +0.1
2,230,710 - Dsui_2107 0.27 +0.1
2,230,766 - Dsui_2107 0.33 +0.3
2,230,813 - Dsui_2107 0.37 -0.5
2,230,875 - Dsui_2107 0.44 -0.3
2,230,890 - Dsui_2107 0.45 +0.2
2,230,913 + Dsui_2107 0.48 +0.5
2,230,957 - Dsui_2107 0.52 +0.4
2,230,989 + Dsui_2107 0.55 +0.6
2,230,989 + +1.4
2,230,997 - Dsui_2107 0.56 -0.1
2,231,008 + -0.3
2,231,132 - Dsui_2107 0.70 -0.7
2,231,139 - Dsui_2107 0.71 +0.5
2,231,163 - Dsui_2107 0.73 +0.5
2,231,192 - Dsui_2107 0.76 +0.6
2,231,238 - Dsui_2107 0.81 -0.0
2,231,248 - Dsui_2107 0.82 +0.0
2,231,268 - Dsui_2107 0.84 +0.1
2,231,297 - Dsui_2107 0.87 +0.1
2,231,297 - Dsui_2107 0.87 +0.5
2,231,297 - Dsui_2107 0.87 +0.0
2,231,297 - Dsui_2107 0.87 +0.3
2,231,297 - Dsui_2107 0.87 -0.2
2,231,310 - Dsui_2107 0.88 -0.3
2,231,371 - +0.8
2,231,381 + +1.0
2,231,389 - -0.3
2,231,389 - -0.1
2,231,392 + -0.5
2,231,476 - -0.3
2,231,512 - +0.0
2,231,589 + -1.0
2,231,600 + +1.0
2,231,661 - +0.4
2,231,848 + Dsui_2108 0.14 +0.3
2,231,865 - Dsui_2108 0.15 +1.1
2,231,964 - Dsui_2108 0.19 +0.5
2,232,011 - Dsui_2108 0.20 +1.4
2,232,013 + Dsui_2108 0.20 +0.3
2,232,127 - +2.0
2,232,476 + Dsui_2108 0.37 -0.2
2,232,532 + Dsui_2108 0.39 +0.4
2,232,532 + Dsui_2108 0.39 +0.5
2,232,540 - Dsui_2108 0.40 -0.8
2,232,540 - Dsui_2108 0.40 +0.6
2,232,559 + Dsui_2108 0.40 -1.8
2,232,564 + Dsui_2108 0.41 +0.3
2,232,602 + Dsui_2108 0.42 -0.0
2,232,681 + Dsui_2108 0.45 +1.0
2,232,684 - Dsui_2108 0.45 -0.3
2,232,725 + Dsui_2108 0.47 -0.7
2,232,819 - Dsui_2108 0.50 +1.4
2,232,853 - Dsui_2108 0.51 -0.9
2,232,855 + Dsui_2108 0.51 -0.0
2,232,863 - Dsui_2108 0.52 -0.5
2,232,864 - Dsui_2108 0.52 +0.3
2,232,866 + Dsui_2108 0.52 +0.3
2,232,874 - Dsui_2108 0.52 -1.1
2,232,936 - Dsui_2108 0.54 +0.9
2,233,063 - Dsui_2108 0.59 +0.1
2,233,283 - Dsui_2108 0.67 +0.1
2,233,423 - Dsui_2108 0.72 +0.3
2,233,464 - Dsui_2108 0.74 -0.1
2,233,530 + Dsui_2108 0.76 -0.0
2,233,593 + Dsui_2108 0.78 +0.5
2,233,681 - Dsui_2108 0.82 +1.0
2,233,686 + Dsui_2108 0.82 +0.1
2,233,754 + Dsui_2108 0.84 +0.3
2,233,773 - Dsui_2108 0.85 -0.4
2,233,780 + Dsui_2108 0.85 -0.0
2,233,950 - -0.4
2,234,038 - -1.9
2,234,129 - +0.7
2,234,168 + -0.7
2,234,216 - +0.0
2,234,348 - +0.5
2,234,386 + +0.6
2,234,439 + -0.7
2,234,452 + +0.3
2,234,499 - +2.0
2,234,501 + +0.2
2,234,547 + -0.7

Or see this region's nucleotide sequence