Experiment: Anaero. lactate (C), perchlorate electron acceptor
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2107 and Dsui_2108 are separated by 25 nucleotides Dsui_2108 and Dsui_2110 are separated by 542 nucleotides
Dsui_2107: Dsui_2107 - hypothetical protein, at 2,230,445 to 2,231,428
_2107
Dsui_2108: Dsui_2108 - superfamily II helicase, at 2,231,454 to 2,234,183
_2108
Dsui_2110: Dsui_2110 - transposase, at 2,234,726 to 2,235,715
_2110
Position (kb)
2231
2232
2233
2234
2235 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2230.460 kb on - strand at 2230.460 kb on - strand at 2230.460 kb on - strand at 2230.460 kb on - strand at 2230.460 kb on - strand at 2230.602 kb on - strand, within Dsui_2107 at 2230.621 kb on + strand at 2230.657 kb on - strand, within Dsui_2107 at 2230.706 kb on - strand, within Dsui_2107 at 2230.710 kb on - strand, within Dsui_2107 at 2230.766 kb on - strand, within Dsui_2107 at 2230.813 kb on - strand, within Dsui_2107 at 2230.875 kb on - strand, within Dsui_2107 at 2230.890 kb on - strand, within Dsui_2107 at 2230.913 kb on + strand, within Dsui_2107 at 2230.957 kb on - strand, within Dsui_2107 at 2230.989 kb on + strand, within Dsui_2107 at 2230.989 kb on + strand at 2230.997 kb on - strand, within Dsui_2107 at 2231.008 kb on + strand at 2231.132 kb on - strand, within Dsui_2107 at 2231.139 kb on - strand, within Dsui_2107 at 2231.163 kb on - strand, within Dsui_2107 at 2231.192 kb on - strand, within Dsui_2107 at 2231.238 kb on - strand, within Dsui_2107 at 2231.248 kb on - strand, within Dsui_2107 at 2231.268 kb on - strand, within Dsui_2107 at 2231.297 kb on - strand, within Dsui_2107 at 2231.297 kb on - strand, within Dsui_2107 at 2231.297 kb on - strand, within Dsui_2107 at 2231.297 kb on - strand, within Dsui_2107 at 2231.297 kb on - strand, within Dsui_2107 at 2231.310 kb on - strand, within Dsui_2107 at 2231.371 kb on - strand at 2231.381 kb on + strand at 2231.389 kb on - strand at 2231.389 kb on - strand at 2231.392 kb on + strand at 2231.476 kb on - strand at 2231.512 kb on - strand at 2231.589 kb on + strand at 2231.600 kb on + strand at 2231.661 kb on - strand at 2231.848 kb on + strand, within Dsui_2108 at 2231.865 kb on - strand, within Dsui_2108 at 2231.964 kb on - strand, within Dsui_2108 at 2232.011 kb on - strand, within Dsui_2108 at 2232.013 kb on + strand, within Dsui_2108 at 2232.127 kb on - strand at 2232.476 kb on + strand, within Dsui_2108 at 2232.532 kb on + strand, within Dsui_2108 at 2232.532 kb on + strand, within Dsui_2108 at 2232.540 kb on - strand, within Dsui_2108 at 2232.540 kb on - strand, within Dsui_2108 at 2232.559 kb on + strand, within Dsui_2108 at 2232.564 kb on + strand, within Dsui_2108 at 2232.602 kb on + strand, within Dsui_2108 at 2232.681 kb on + strand, within Dsui_2108 at 2232.684 kb on - strand, within Dsui_2108 at 2232.725 kb on + strand, within Dsui_2108 at 2232.819 kb on - strand, within Dsui_2108 at 2232.853 kb on - strand, within Dsui_2108 at 2232.855 kb on + strand, within Dsui_2108 at 2232.863 kb on - strand, within Dsui_2108 at 2232.864 kb on - strand, within Dsui_2108 at 2232.866 kb on + strand, within Dsui_2108 at 2232.874 kb on - strand, within Dsui_2108 at 2232.936 kb on - strand, within Dsui_2108 at 2233.063 kb on - strand, within Dsui_2108 at 2233.283 kb on - strand, within Dsui_2108 at 2233.423 kb on - strand, within Dsui_2108 at 2233.464 kb on - strand, within Dsui_2108 at 2233.530 kb on + strand, within Dsui_2108 at 2233.593 kb on + strand, within Dsui_2108 at 2233.681 kb on - strand, within Dsui_2108 at 2233.686 kb on + strand, within Dsui_2108 at 2233.754 kb on + strand, within Dsui_2108 at 2233.773 kb on - strand, within Dsui_2108 at 2233.780 kb on + strand, within Dsui_2108 at 2233.950 kb on - strand at 2234.038 kb on - strand at 2234.129 kb on - strand at 2234.168 kb on + strand at 2234.216 kb on - strand at 2234.348 kb on - strand at 2234.386 kb on + strand at 2234.439 kb on + strand at 2234.452 kb on + strand at 2234.499 kb on - strand at 2234.501 kb on + strand at 2234.547 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Anaero. lactate (C), perchlorate electron acceptor remove 2,230,460 - +0.3 2,230,460 - -0.2 2,230,460 - +0.5 2,230,460 - -0.6 2,230,460 - -0.4 2,230,602 - Dsui_2107 0.16 +0.6 2,230,621 + -0.0 2,230,657 - Dsui_2107 0.22 +0.1 2,230,706 - Dsui_2107 0.27 +0.1 2,230,710 - Dsui_2107 0.27 +0.1 2,230,766 - Dsui_2107 0.33 +0.3 2,230,813 - Dsui_2107 0.37 -0.5 2,230,875 - Dsui_2107 0.44 -0.3 2,230,890 - Dsui_2107 0.45 +0.2 2,230,913 + Dsui_2107 0.48 +0.5 2,230,957 - Dsui_2107 0.52 +0.4 2,230,989 + Dsui_2107 0.55 +0.6 2,230,989 + +1.4 2,230,997 - Dsui_2107 0.56 -0.1 2,231,008 + -0.3 2,231,132 - Dsui_2107 0.70 -0.7 2,231,139 - Dsui_2107 0.71 +0.5 2,231,163 - Dsui_2107 0.73 +0.5 2,231,192 - Dsui_2107 0.76 +0.6 2,231,238 - Dsui_2107 0.81 -0.0 2,231,248 - Dsui_2107 0.82 +0.0 2,231,268 - Dsui_2107 0.84 +0.1 2,231,297 - Dsui_2107 0.87 +0.1 2,231,297 - Dsui_2107 0.87 +0.5 2,231,297 - Dsui_2107 0.87 +0.0 2,231,297 - Dsui_2107 0.87 +0.3 2,231,297 - Dsui_2107 0.87 -0.2 2,231,310 - Dsui_2107 0.88 -0.3 2,231,371 - +0.8 2,231,381 + +1.0 2,231,389 - -0.3 2,231,389 - -0.1 2,231,392 + -0.5 2,231,476 - -0.3 2,231,512 - +0.0 2,231,589 + -1.0 2,231,600 + +1.0 2,231,661 - +0.4 2,231,848 + Dsui_2108 0.14 +0.3 2,231,865 - Dsui_2108 0.15 +1.1 2,231,964 - Dsui_2108 0.19 +0.5 2,232,011 - Dsui_2108 0.20 +1.4 2,232,013 + Dsui_2108 0.20 +0.3 2,232,127 - +2.0 2,232,476 + Dsui_2108 0.37 -0.2 2,232,532 + Dsui_2108 0.39 +0.4 2,232,532 + Dsui_2108 0.39 +0.5 2,232,540 - Dsui_2108 0.40 -0.8 2,232,540 - Dsui_2108 0.40 +0.6 2,232,559 + Dsui_2108 0.40 -1.8 2,232,564 + Dsui_2108 0.41 +0.3 2,232,602 + Dsui_2108 0.42 -0.0 2,232,681 + Dsui_2108 0.45 +1.0 2,232,684 - Dsui_2108 0.45 -0.3 2,232,725 + Dsui_2108 0.47 -0.7 2,232,819 - Dsui_2108 0.50 +1.4 2,232,853 - Dsui_2108 0.51 -0.9 2,232,855 + Dsui_2108 0.51 -0.0 2,232,863 - Dsui_2108 0.52 -0.5 2,232,864 - Dsui_2108 0.52 +0.3 2,232,866 + Dsui_2108 0.52 +0.3 2,232,874 - Dsui_2108 0.52 -1.1 2,232,936 - Dsui_2108 0.54 +0.9 2,233,063 - Dsui_2108 0.59 +0.1 2,233,283 - Dsui_2108 0.67 +0.1 2,233,423 - Dsui_2108 0.72 +0.3 2,233,464 - Dsui_2108 0.74 -0.1 2,233,530 + Dsui_2108 0.76 -0.0 2,233,593 + Dsui_2108 0.78 +0.5 2,233,681 - Dsui_2108 0.82 +1.0 2,233,686 + Dsui_2108 0.82 +0.1 2,233,754 + Dsui_2108 0.84 +0.3 2,233,773 - Dsui_2108 0.85 -0.4 2,233,780 + Dsui_2108 0.85 -0.0 2,233,950 - -0.4 2,234,038 - -1.9 2,234,129 - +0.7 2,234,168 + -0.7 2,234,216 - +0.0 2,234,348 - +0.5 2,234,386 + +0.6 2,234,439 + -0.7 2,234,452 + +0.3 2,234,499 - +2.0 2,234,501 + +0.2 2,234,547 + -0.7
Or see this region's nucleotide sequence