Strain Fitness in Dechlorosoma suillum PS around Dsui_2040

Experiment: Anaero. lactate (C), perchlorate electron acceptor

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2039 and Dsui_2040 are separated by 26 nucleotidesDsui_2040 and Dsui_2041 are separated by 60 nucleotidesDsui_2041 and Dsui_2042 are separated by 20 nucleotides Dsui_2039: Dsui_2039 - OAH/OAS sulfhydrylase, at 2,158,129 to 2,159,415 _2039 Dsui_2040: Dsui_2040 - putative CoA-binding protein, at 2,159,442 to 2,159,900 _2040 Dsui_2041: Dsui_2041 - enoyl-CoA hydratase/carnithine racemase, at 2,159,961 to 2,160,746 _2041 Dsui_2042: Dsui_2042 - cystathionine beta-lyase/cystathionine gamma-synthase, at 2,160,767 to 2,161,945 _2042 Position (kb) 2159 2160Strain fitness (log2 ratio) -2 -1 0 1 2at 2158.447 kb on + strand, within Dsui_2039at 2158.458 kb on + strand, within Dsui_2039at 2158.490 kb on + strand, within Dsui_2039at 2158.542 kb on + strand, within Dsui_2039at 2158.558 kb on - strand, within Dsui_2039at 2158.559 kb on - strand, within Dsui_2039at 2158.617 kb on - strand, within Dsui_2039at 2158.678 kb on + strand, within Dsui_2039at 2158.691 kb on - strand, within Dsui_2039at 2158.758 kb on + strandat 2158.781 kb on + strandat 2158.801 kb on + strand, within Dsui_2039at 2158.814 kb on - strand, within Dsui_2039at 2158.832 kb on + strand, within Dsui_2039at 2158.842 kb on + strand, within Dsui_2039at 2158.884 kb on - strand, within Dsui_2039at 2158.932 kb on + strand, within Dsui_2039at 2158.965 kb on + strandat 2158.973 kb on - strand, within Dsui_2039at 2158.978 kb on - strand, within Dsui_2039at 2159.225 kb on - strand, within Dsui_2039at 2159.250 kb on - strand, within Dsui_2039at 2159.260 kb on + strand, within Dsui_2039at 2159.268 kb on - strand, within Dsui_2039at 2159.419 kb on - strandat 2159.429 kb on - strandat 2159.450 kb on + strandat 2159.450 kb on + strandat 2159.458 kb on - strandat 2159.608 kb on + strand, within Dsui_2040at 2159.615 kb on + strand, within Dsui_2040at 2159.719 kb on + strand, within Dsui_2040at 2159.854 kb on - strand, within Dsui_2040at 2159.872 kb on + strandat 2159.876 kb on + strandat 2159.880 kb on - strandat 2159.945 kb on + strandat 2159.951 kb on - strandat 2159.978 kb on - strandat 2160.064 kb on + strand, within Dsui_2041at 2160.110 kb on - strand, within Dsui_2041at 2160.117 kb on - strand, within Dsui_2041at 2160.119 kb on + strandat 2160.220 kb on - strand, within Dsui_2041at 2160.246 kb on - strand, within Dsui_2041at 2160.261 kb on + strandat 2160.269 kb on - strand, within Dsui_2041at 2160.277 kb on - strandat 2160.324 kb on - strand, within Dsui_2041at 2160.324 kb on - strandat 2160.460 kb on + strandat 2160.470 kb on + strandat 2160.506 kb on - strand, within Dsui_2041at 2160.592 kb on - strandat 2160.625 kb on + strand, within Dsui_2041at 2160.696 kb on - strandat 2160.765 kb on - strandat 2160.789 kb on - strandat 2160.789 kb on - strandat 2160.792 kb on + strandat 2160.792 kb on + strandat 2160.868 kb on + strandat 2160.876 kb on - strandat 2160.876 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaero. lactate (C), perchlorate electron acceptor
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2,158,447 + Dsui_2039 0.25 -0.0
2,158,458 + Dsui_2039 0.26 +0.9
2,158,490 + Dsui_2039 0.28 -0.0
2,158,542 + Dsui_2039 0.32 +0.9
2,158,558 - Dsui_2039 0.33 -0.7
2,158,559 - Dsui_2039 0.33 +1.0
2,158,617 - Dsui_2039 0.38 -0.5
2,158,678 + Dsui_2039 0.43 -0.1
2,158,691 - Dsui_2039 0.44 +0.1
2,158,758 + +1.0
2,158,781 + +1.3
2,158,801 + Dsui_2039 0.52 -0.9
2,158,814 - Dsui_2039 0.53 -0.7
2,158,832 + Dsui_2039 0.55 -0.2
2,158,842 + Dsui_2039 0.55 +0.4
2,158,884 - Dsui_2039 0.59 -0.8
2,158,932 + Dsui_2039 0.62 -0.6
2,158,965 + -0.0
2,158,973 - Dsui_2039 0.66 -0.6
2,158,978 - Dsui_2039 0.66 -0.4
2,159,225 - Dsui_2039 0.85 -0.5
2,159,250 - Dsui_2039 0.87 -0.8
2,159,260 + Dsui_2039 0.88 +0.1
2,159,268 - Dsui_2039 0.89 -0.2
2,159,419 - +0.0
2,159,429 - +0.2
2,159,450 + -0.6
2,159,450 + +0.2
2,159,458 - -0.1
2,159,608 + Dsui_2040 0.36 -0.6
2,159,615 + Dsui_2040 0.38 -0.3
2,159,719 + Dsui_2040 0.60 -0.3
2,159,854 - Dsui_2040 0.90 -0.1
2,159,872 + +0.4
2,159,876 + -0.3
2,159,880 - -1.8
2,159,945 + -1.0
2,159,951 - -0.1
2,159,978 - +0.2
2,160,064 + Dsui_2041 0.13 -1.1
2,160,110 - Dsui_2041 0.19 +1.0
2,160,117 - Dsui_2041 0.20 +0.4
2,160,119 + +1.0
2,160,220 - Dsui_2041 0.33 -1.0
2,160,246 - Dsui_2041 0.36 -0.0
2,160,261 + +1.0
2,160,269 - Dsui_2041 0.39 -0.8
2,160,277 - -0.6
2,160,324 - Dsui_2041 0.46 -0.6
2,160,324 - +0.4
2,160,460 + +1.0
2,160,470 + +0.2
2,160,506 - Dsui_2041 0.69 -1.2
2,160,592 - +2.0
2,160,625 + Dsui_2041 0.84 -1.2
2,160,696 - +1.6
2,160,765 - +0.1
2,160,789 - +0.4
2,160,789 - -0.7
2,160,792 + -0.8
2,160,792 + +0.4
2,160,868 + -0.6
2,160,876 - -0.0
2,160,876 - +2.0

Or see this region's nucleotide sequence