Strain Fitness in Dechlorosoma suillum PS around Dsui_1986

Experiment: Anaero. lactate (C), perchlorate electron acceptor

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1984 and Dsui_1985 overlap by 4 nucleotidesDsui_1985 and Dsui_1986 are separated by 28 nucleotidesDsui_1986 and Dsui_1987 are separated by 24 nucleotidesDsui_1987 and Dsui_1988 are separated by 105 nucleotides Dsui_1984: Dsui_1984 - thioredoxin-dependent adenylylsulfate APS reductase, at 2,093,708 to 2,094,430 _1984 Dsui_1985: Dsui_1985 - hypothetical protein, at 2,094,427 to 2,094,945 _1985 Dsui_1986: Dsui_1986 - sulfite reductase, beta subunit (hemoprotein), at 2,094,974 to 2,096,650 _1986 Dsui_1987: Dsui_1987 - putative permease, at 2,096,675 to 2,097,448 _1987 Dsui_1988: Dsui_1988 - transcriptional regulator, at 2,097,554 to 2,098,528 _1988 Position (kb) 2094 2095 2096 2097Strain fitness (log2 ratio) -1 0 1 2 3at 2094.992 kb on - strandat 2095.013 kb on - strandat 2096.707 kb on - strandat 2096.785 kb on + strandat 2096.785 kb on + strandat 2096.871 kb on - strand, within Dsui_1987at 2096.925 kb on - strand, within Dsui_1987at 2096.925 kb on - strand, within Dsui_1987at 2096.997 kb on - strand, within Dsui_1987at 2096.997 kb on - strand, within Dsui_1987at 2097.003 kb on - strand, within Dsui_1987at 2097.063 kb on + strandat 2097.063 kb on + strandat 2097.069 kb on - strand, within Dsui_1987at 2097.071 kb on - strand, within Dsui_1987at 2097.191 kb on - strand, within Dsui_1987at 2097.192 kb on - strand, within Dsui_1987at 2097.276 kb on - strand, within Dsui_1987at 2097.308 kb on - strand, within Dsui_1987at 2097.325 kb on - strand, within Dsui_1987at 2097.441 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaero. lactate (C), perchlorate electron acceptor
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2,094,992 - -0.1
2,095,013 - +0.3
2,096,707 - +1.2
2,096,785 + -0.3
2,096,785 + +2.0
2,096,871 - Dsui_1987 0.25 +1.8
2,096,925 - Dsui_1987 0.32 +2.7
2,096,925 - Dsui_1987 0.32 +2.1
2,096,997 - Dsui_1987 0.42 +1.2
2,096,997 - Dsui_1987 0.42 +1.2
2,097,003 - Dsui_1987 0.42 +2.1
2,097,063 + +0.6
2,097,063 + +2.0
2,097,069 - Dsui_1987 0.51 +1.7
2,097,071 - Dsui_1987 0.51 +1.0
2,097,191 - Dsui_1987 0.67 +1.1
2,097,192 - Dsui_1987 0.67 +3.3
2,097,276 - Dsui_1987 0.78 +1.6
2,097,308 - Dsui_1987 0.82 +2.7
2,097,325 - Dsui_1987 0.84 +2.3
2,097,441 - +2.4

Or see this region's nucleotide sequence