Strain Fitness in Dechlorosoma suillum PS around Dsui_1724

Experiment: Anaero. lactate (C), perchlorate electron acceptor

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1723 and Dsui_1724 overlap by 4 nucleotidesDsui_1724 and Dsui_1725 overlap by 20 nucleotidesDsui_1725 and Dsui_1726 are separated by 12 nucleotides Dsui_1723: Dsui_1723 - flagellar biosynthesis protein FlhA, at 1,813,427 to 1,815,508 _1723 Dsui_1724: Dsui_1724 - flagellar biosynthetic protein FlhF, at 1,815,505 to 1,816,872 _1724 Dsui_1725: Dsui_1725 - ATPase involved in chromosome partitioning, at 1,816,853 to 1,817,755 _1725 Dsui_1726: Dsui_1726 - RNA polymerase sigma factor, FliA/WhiG family, at 1,817,768 to 1,818,508 _1726 Position (kb) 1815 1816 1817Strain fitness (log2 ratio) -2 -1 0 1 2at 1814.529 kb on - strand, within Dsui_1723at 1814.550 kb on + strand, within Dsui_1723at 1814.559 kb on - strand, within Dsui_1723at 1814.617 kb on - strand, within Dsui_1723at 1814.638 kb on + strand, within Dsui_1723at 1814.649 kb on + strand, within Dsui_1723at 1814.649 kb on + strand, within Dsui_1723at 1814.657 kb on - strand, within Dsui_1723at 1814.657 kb on - strand, within Dsui_1723at 1814.684 kb on - strand, within Dsui_1723at 1814.691 kb on - strand, within Dsui_1723at 1814.782 kb on - strand, within Dsui_1723at 1814.845 kb on + strand, within Dsui_1723at 1814.906 kb on + strand, within Dsui_1723at 1815.010 kb on + strand, within Dsui_1723at 1815.038 kb on + strand, within Dsui_1723at 1815.046 kb on - strand, within Dsui_1723at 1815.065 kb on + strand, within Dsui_1723at 1815.073 kb on - strand, within Dsui_1723at 1815.137 kb on + strand, within Dsui_1723at 1815.137 kb on + strand, within Dsui_1723at 1815.137 kb on + strand, within Dsui_1723at 1815.142 kb on + strand, within Dsui_1723at 1815.145 kb on - strand, within Dsui_1723at 1815.150 kb on - strand, within Dsui_1723at 1815.152 kb on - strand, within Dsui_1723at 1815.341 kb on + strandat 1815.347 kb on + strandat 1815.430 kb on + strandat 1815.437 kb on - strandat 1815.490 kb on + strandat 1815.552 kb on - strandat 1815.671 kb on + strand, within Dsui_1724at 1815.693 kb on + strand, within Dsui_1724at 1815.719 kb on - strand, within Dsui_1724at 1815.727 kb on - strand, within Dsui_1724at 1815.909 kb on + strand, within Dsui_1724at 1815.951 kb on + strand, within Dsui_1724at 1815.981 kb on + strand, within Dsui_1724at 1815.989 kb on - strand, within Dsui_1724at 1816.003 kb on + strand, within Dsui_1724at 1816.010 kb on - strand, within Dsui_1724at 1816.122 kb on + strand, within Dsui_1724at 1816.252 kb on - strand, within Dsui_1724at 1816.299 kb on + strand, within Dsui_1724at 1816.338 kb on - strand, within Dsui_1724at 1816.375 kb on + strand, within Dsui_1724at 1816.438 kb on - strand, within Dsui_1724at 1816.572 kb on - strand, within Dsui_1724at 1816.679 kb on + strand, within Dsui_1724at 1816.687 kb on - strand, within Dsui_1724at 1816.927 kb on - strandat 1817.019 kb on - strand, within Dsui_1725at 1817.019 kb on - strandat 1817.230 kb on - strand, within Dsui_1725at 1817.236 kb on - strand, within Dsui_1725at 1817.376 kb on + strand, within Dsui_1725at 1817.443 kb on + strand, within Dsui_1725at 1817.451 kb on - strand, within Dsui_1725at 1817.517 kb on + strand, within Dsui_1725at 1817.540 kb on + strand, within Dsui_1725at 1817.548 kb on - strand, within Dsui_1725at 1817.655 kb on + strand, within Dsui_1725at 1817.655 kb on + strand, within Dsui_1725at 1817.749 kb on - strandat 1817.750 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaero. lactate (C), perchlorate electron acceptor
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1,814,529 - Dsui_1723 0.53 -0.9
1,814,550 + Dsui_1723 0.54 -0.5
1,814,559 - Dsui_1723 0.54 -0.9
1,814,617 - Dsui_1723 0.57 -1.4
1,814,638 + Dsui_1723 0.58 +0.2
1,814,649 + Dsui_1723 0.59 -0.2
1,814,649 + Dsui_1723 0.59 -0.7
1,814,657 - Dsui_1723 0.59 -0.7
1,814,657 - Dsui_1723 0.59 -2.5
1,814,684 - Dsui_1723 0.60 -1.0
1,814,691 - Dsui_1723 0.61 -1.7
1,814,782 - Dsui_1723 0.65 -1.1
1,814,845 + Dsui_1723 0.68 -1.0
1,814,906 + Dsui_1723 0.71 -1.1
1,815,010 + Dsui_1723 0.76 -0.5
1,815,038 + Dsui_1723 0.77 -0.5
1,815,046 - Dsui_1723 0.78 +0.6
1,815,065 + Dsui_1723 0.79 -0.3
1,815,073 - Dsui_1723 0.79 -0.6
1,815,137 + Dsui_1723 0.82 -0.6
1,815,137 + Dsui_1723 0.82 -0.5
1,815,137 + Dsui_1723 0.82 -0.7
1,815,142 + Dsui_1723 0.82 -0.9
1,815,145 - Dsui_1723 0.83 -0.9
1,815,150 - Dsui_1723 0.83 -0.7
1,815,152 - Dsui_1723 0.83 -0.3
1,815,341 + +0.9
1,815,347 + -2.2
1,815,430 + -0.8
1,815,437 - -1.0
1,815,490 + -0.9
1,815,552 - -1.2
1,815,671 + Dsui_1724 0.12 -0.2
1,815,693 + Dsui_1724 0.14 +0.0
1,815,719 - Dsui_1724 0.16 +0.8
1,815,727 - Dsui_1724 0.16 -0.5
1,815,909 + Dsui_1724 0.30 -1.2
1,815,951 + Dsui_1724 0.33 -0.7
1,815,981 + Dsui_1724 0.35 -1.4
1,815,989 - Dsui_1724 0.35 -0.7
1,816,003 + Dsui_1724 0.36 -0.2
1,816,010 - Dsui_1724 0.37 -0.8
1,816,122 + Dsui_1724 0.45 -0.3
1,816,252 - Dsui_1724 0.55 -0.9
1,816,299 + Dsui_1724 0.58 -0.1
1,816,338 - Dsui_1724 0.61 +0.1
1,816,375 + Dsui_1724 0.64 -0.5
1,816,438 - Dsui_1724 0.68 -1.0
1,816,572 - Dsui_1724 0.78 -1.7
1,816,679 + Dsui_1724 0.86 -0.9
1,816,687 - Dsui_1724 0.86 -1.8
1,816,927 - +1.7
1,817,019 - Dsui_1725 0.18 +1.3
1,817,019 - +2.0
1,817,230 - Dsui_1725 0.42 -0.3
1,817,236 - Dsui_1725 0.42 -0.1
1,817,376 + Dsui_1725 0.58 +0.8
1,817,443 + Dsui_1725 0.65 +0.7
1,817,451 - Dsui_1725 0.66 -0.1
1,817,517 + Dsui_1725 0.74 +0.8
1,817,540 + Dsui_1725 0.76 +0.4
1,817,548 - Dsui_1725 0.77 -0.5
1,817,655 + Dsui_1725 0.89 -0.1
1,817,655 + Dsui_1725 0.89 -0.1
1,817,749 - +0.9
1,817,750 + -0.1

Or see this region's nucleotide sequence