Strain Fitness in Dechlorosoma suillum PS around Dsui_1690

Experiment: Anaero. lactate (C), perchlorate electron acceptor

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1689 and Dsui_1690 are separated by 155 nucleotidesDsui_1690 and Dsui_1691 are separated by 49 nucleotides Dsui_1689: Dsui_1689 - thioredoxin-disulfide reductase, at 1,776,432 to 1,777,391 _1689 Dsui_1690: Dsui_1690 - cAMP-binding protein, at 1,777,547 to 1,778,206 _1690 Dsui_1691: Dsui_1691 - DNA segregation ATPase, FtsK/SpoIIIE family, at 1,778,256 to 1,780,571 _1691 Position (kb) 1777 1778 1779Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 1777.401 kb on - strandat 1777.511 kb on + strandat 1777.519 kb on - strandat 1777.545 kb on + strandat 1777.560 kb on - strandat 1777.562 kb on + strandat 1777.565 kb on - strandat 1777.570 kb on - strandat 1777.628 kb on + strand, within Dsui_1690at 1777.633 kb on + strand, within Dsui_1690at 1777.722 kb on - strand, within Dsui_1690at 1777.724 kb on + strand, within Dsui_1690at 1777.736 kb on - strand, within Dsui_1690at 1777.788 kb on - strand, within Dsui_1690at 1777.798 kb on - strand, within Dsui_1690at 1777.944 kb on + strand, within Dsui_1690at 1778.070 kb on + strand, within Dsui_1690at 1778.070 kb on + strand, within Dsui_1690at 1778.092 kb on - strand, within Dsui_1690at 1778.235 kb on + strandat 1778.235 kb on + strandat 1778.235 kb on + strandat 1778.235 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaero. lactate (C), perchlorate electron acceptor
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1,777,401 - +0.7
1,777,511 + -0.7
1,777,519 - +2.0
1,777,545 + -1.2
1,777,560 - -1.0
1,777,562 + -1.6
1,777,565 - +0.7
1,777,570 - -2.3
1,777,628 + Dsui_1690 0.12 -1.5
1,777,633 + Dsui_1690 0.13 -1.3
1,777,722 - Dsui_1690 0.27 -1.8
1,777,724 + Dsui_1690 0.27 -2.3
1,777,736 - Dsui_1690 0.29 -1.0
1,777,788 - Dsui_1690 0.37 -1.4
1,777,798 - Dsui_1690 0.38 -4.0
1,777,944 + Dsui_1690 0.60 -1.4
1,778,070 + Dsui_1690 0.79 -0.5
1,778,070 + Dsui_1690 0.79 -1.2
1,778,092 - Dsui_1690 0.83 -0.5
1,778,235 + -1.6
1,778,235 + -2.5
1,778,235 + -0.3
1,778,235 + -0.5

Or see this region's nucleotide sequence