Strain Fitness in Dechlorosoma suillum PS around Dsui_1689

Experiment: Anaero. lactate (C), perchlorate electron acceptor

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1688 and Dsui_1689 are separated by 18 nucleotidesDsui_1689 and Dsui_1690 are separated by 155 nucleotidesDsui_1690 and Dsui_1691 are separated by 49 nucleotides Dsui_1688: Dsui_1688 - hypothetical protein, at 1,775,367 to 1,776,413 _1688 Dsui_1689: Dsui_1689 - thioredoxin-disulfide reductase, at 1,776,432 to 1,777,391 _1689 Dsui_1690: Dsui_1690 - cAMP-binding protein, at 1,777,547 to 1,778,206 _1690 Dsui_1691: Dsui_1691 - DNA segregation ATPase, FtsK/SpoIIIE family, at 1,778,256 to 1,780,571 _1691 Position (kb) 1776 1777 1778Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 1775.541 kb on + strandat 1775.541 kb on + strandat 1775.627 kb on - strand, within Dsui_1688at 1775.980 kb on + strandat 1776.077 kb on + strand, within Dsui_1688at 1776.164 kb on - strand, within Dsui_1688at 1776.212 kb on - strand, within Dsui_1688at 1776.322 kb on + strandat 1776.322 kb on + strandat 1776.438 kb on - strandat 1776.440 kb on + strandat 1777.401 kb on - strandat 1777.511 kb on + strandat 1777.519 kb on - strandat 1777.545 kb on + strandat 1777.560 kb on - strandat 1777.562 kb on + strandat 1777.565 kb on - strandat 1777.570 kb on - strandat 1777.628 kb on + strand, within Dsui_1690at 1777.633 kb on + strand, within Dsui_1690at 1777.722 kb on - strand, within Dsui_1690at 1777.724 kb on + strand, within Dsui_1690at 1777.736 kb on - strand, within Dsui_1690at 1777.788 kb on - strand, within Dsui_1690at 1777.798 kb on - strand, within Dsui_1690at 1777.944 kb on + strand, within Dsui_1690at 1778.070 kb on + strand, within Dsui_1690at 1778.070 kb on + strand, within Dsui_1690at 1778.092 kb on - strand, within Dsui_1690at 1778.235 kb on + strandat 1778.235 kb on + strandat 1778.235 kb on + strandat 1778.235 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaero. lactate (C), perchlorate electron acceptor
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1,775,541 + +0.4
1,775,541 + -0.8
1,775,627 - Dsui_1688 0.25 +0.2
1,775,980 + +1.0
1,776,077 + Dsui_1688 0.68 -1.0
1,776,164 - Dsui_1688 0.76 +0.0
1,776,212 - Dsui_1688 0.81 +0.8
1,776,322 + +0.4
1,776,322 + +1.0
1,776,438 - +0.5
1,776,440 + +2.4
1,777,401 - +0.7
1,777,511 + -0.7
1,777,519 - +2.0
1,777,545 + -1.2
1,777,560 - -1.0
1,777,562 + -1.6
1,777,565 - +0.7
1,777,570 - -2.3
1,777,628 + Dsui_1690 0.12 -1.5
1,777,633 + Dsui_1690 0.13 -1.3
1,777,722 - Dsui_1690 0.27 -1.8
1,777,724 + Dsui_1690 0.27 -2.3
1,777,736 - Dsui_1690 0.29 -1.0
1,777,788 - Dsui_1690 0.37 -1.4
1,777,798 - Dsui_1690 0.38 -4.0
1,777,944 + Dsui_1690 0.60 -1.4
1,778,070 + Dsui_1690 0.79 -0.5
1,778,070 + Dsui_1690 0.79 -1.2
1,778,092 - Dsui_1690 0.83 -0.5
1,778,235 + -1.6
1,778,235 + -2.5
1,778,235 + -0.3
1,778,235 + -0.5

Or see this region's nucleotide sequence