Experiment: Anaero. lactate (C), perchlorate electron acceptor
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1277 and Dsui_1278 are separated by 12 nucleotides Dsui_1278 and Dsui_1279 are separated by 88 nucleotides
Dsui_1277: Dsui_1277 - glycerol-3-phosphate dehydrogenase, at 1,338,290 to 1,339,285
_1277
Dsui_1278: Dsui_1278 - putative rRNA methylase SpoU family, at 1,339,298 to 1,339,762
_1278
Dsui_1279: Dsui_1279 - type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB, at 1,339,851 to 1,341,557
_1279
Position (kb)
1339
1340 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1339.264 kb on + strand at 1339.333 kb on + strand at 1339.510 kb on - strand, within Dsui_1278 at 1339.510 kb on - strand, within Dsui_1278 at 1339.594 kb on - strand, within Dsui_1278 at 1339.655 kb on + strand, within Dsui_1278 at 1339.662 kb on + strand, within Dsui_1278 at 1339.689 kb on + strand, within Dsui_1278 at 1339.689 kb on + strand, within Dsui_1278 at 1339.695 kb on + strand, within Dsui_1278 at 1339.702 kb on + strand, within Dsui_1278 at 1339.729 kb on - strand at 1339.731 kb on + strand at 1339.742 kb on + strand at 1339.749 kb on - strand at 1339.899 kb on + strand at 1339.902 kb on + strand at 1339.902 kb on - strand at 1339.912 kb on + strand at 1339.915 kb on - strand at 1339.919 kb on + strand at 1339.919 kb on + strand at 1339.919 kb on + strand at 1339.919 kb on + strand at 1339.927 kb on - strand at 1339.936 kb on - strand at 1339.994 kb on - strand at 1340.099 kb on + strand, within Dsui_1279 at 1340.173 kb on + strand, within Dsui_1279 at 1340.249 kb on - strand, within Dsui_1279 at 1340.366 kb on - strand, within Dsui_1279 at 1340.413 kb on - strand, within Dsui_1279 at 1340.443 kb on + strand, within Dsui_1279 at 1340.514 kb on + strand, within Dsui_1279 at 1340.519 kb on + strand, within Dsui_1279 at 1340.555 kb on - strand, within Dsui_1279 at 1340.577 kb on + strand, within Dsui_1279 at 1340.617 kb on - strand, within Dsui_1279 at 1340.631 kb on - strand, within Dsui_1279 at 1340.730 kb on + strand, within Dsui_1279 at 1340.760 kb on + strand, within Dsui_1279
Per-strain Table
Position Strand Gene LocusTag Fraction Anaero. lactate (C), perchlorate electron acceptor remove 1,339,264 + +1.0 1,339,333 + +0.8 1,339,510 - Dsui_1278 0.46 +0.2 1,339,510 - Dsui_1278 0.46 -0.3 1,339,594 - Dsui_1278 0.64 -0.7 1,339,655 + Dsui_1278 0.77 -0.0 1,339,662 + Dsui_1278 0.78 -0.5 1,339,689 + Dsui_1278 0.84 -0.6 1,339,689 + Dsui_1278 0.84 +0.3 1,339,695 + Dsui_1278 0.85 -1.1 1,339,702 + Dsui_1278 0.87 -1.0 1,339,729 - -0.7 1,339,731 + +0.9 1,339,742 + +0.0 1,339,749 - +0.3 1,339,899 + -2.6 1,339,902 + -2.8 1,339,902 - -1.2 1,339,912 + -1.3 1,339,915 - -2.4 1,339,919 + -2.5 1,339,919 + -1.6 1,339,919 + -2.0 1,339,919 + -2.7 1,339,927 - -3.4 1,339,936 - -2.4 1,339,994 - -2.8 1,340,099 + Dsui_1279 0.15 -2.2 1,340,173 + Dsui_1279 0.19 -2.0 1,340,249 - Dsui_1279 0.23 -0.1 1,340,366 - Dsui_1279 0.30 -2.1 1,340,413 - Dsui_1279 0.33 -2.1 1,340,443 + Dsui_1279 0.35 -2.1 1,340,514 + Dsui_1279 0.39 -2.2 1,340,519 + Dsui_1279 0.39 -1.7 1,340,555 - Dsui_1279 0.41 -3.3 1,340,577 + Dsui_1279 0.43 -1.7 1,340,617 - Dsui_1279 0.45 -1.2 1,340,631 - Dsui_1279 0.46 -1.2 1,340,730 + Dsui_1279 0.51 -1.9 1,340,760 + Dsui_1279 0.53 -3.3
Or see this region's nucleotide sequence