Experiment: Anaero. lactate (C), perchlorate electron acceptor
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1153 and Dsui_1154 are separated by 139 nucleotides Dsui_1154 and Dsui_1155 are separated by 6 nucleotides
Dsui_1153: Dsui_1153 - Ni,Fe-hydrogenase I small subunit, at 1,208,003 to 1,208,998
_1153
Dsui_1154: Dsui_1154 - response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains, at 1,209,138 to 1,210,613
_1154
Dsui_1155: Dsui_1155 - methionyl-tRNA formyltransferase, at 1,210,620 to 1,212,353
_1155
Position (kb)
1209
1210
1211 Strain fitness (log2 ratio)
-1
0
1
2 at 1208.165 kb on - strand, within Dsui_1153 at 1208.216 kb on + strand, within Dsui_1153 at 1208.269 kb on - strand, within Dsui_1153 at 1208.335 kb on + strand, within Dsui_1153 at 1208.415 kb on - strand, within Dsui_1153 at 1208.562 kb on + strand, within Dsui_1153 at 1208.719 kb on - strand, within Dsui_1153 at 1209.019 kb on + strand at 1209.038 kb on - strand at 1209.066 kb on + strand at 1209.187 kb on - strand at 1209.195 kb on + strand at 1209.211 kb on + strand at 1209.219 kb on - strand at 1209.284 kb on + strand at 1209.303 kb on - strand, within Dsui_1154 at 1209.357 kb on - strand, within Dsui_1154 at 1209.394 kb on + strand, within Dsui_1154 at 1209.427 kb on - strand, within Dsui_1154 at 1209.505 kb on + strand, within Dsui_1154 at 1209.505 kb on + strand, within Dsui_1154 at 1209.596 kb on + strand, within Dsui_1154 at 1209.596 kb on + strand, within Dsui_1154 at 1209.604 kb on - strand, within Dsui_1154 at 1209.717 kb on + strand at 1209.724 kb on + strand, within Dsui_1154 at 1209.814 kb on + strand, within Dsui_1154 at 1210.009 kb on + strand, within Dsui_1154 at 1210.009 kb on + strand, within Dsui_1154 at 1210.009 kb on + strand at 1210.037 kb on - strand, within Dsui_1154 at 1210.044 kb on + strand, within Dsui_1154 at 1210.186 kb on - strand, within Dsui_1154 at 1210.283 kb on + strand, within Dsui_1154 at 1210.366 kb on - strand, within Dsui_1154 at 1210.368 kb on + strand, within Dsui_1154 at 1210.411 kb on + strand, within Dsui_1154 at 1210.639 kb on + strand at 1210.639 kb on + strand at 1210.647 kb on - strand at 1210.647 kb on - strand at 1210.678 kb on + strand at 1210.709 kb on + strand at 1210.928 kb on - strand, within Dsui_1155 at 1210.941 kb on + strand, within Dsui_1155 at 1210.966 kb on + strand at 1211.266 kb on + strand, within Dsui_1155 at 1211.276 kb on + strand at 1211.283 kb on - strand, within Dsui_1155 at 1211.342 kb on + strand, within Dsui_1155 at 1211.401 kb on - strand, within Dsui_1155 at 1211.530 kb on + strand, within Dsui_1155 at 1211.552 kb on + strand, within Dsui_1155
Per-strain Table
Position Strand Gene LocusTag Fraction Anaero. lactate (C), perchlorate electron acceptor remove 1,208,165 - Dsui_1153 0.16 -0.3 1,208,216 + Dsui_1153 0.21 -0.4 1,208,269 - Dsui_1153 0.27 +0.8 1,208,335 + Dsui_1153 0.33 +1.1 1,208,415 - Dsui_1153 0.41 +1.4 1,208,562 + Dsui_1153 0.56 -0.4 1,208,719 - Dsui_1153 0.72 +0.1 1,209,019 + -0.4 1,209,038 - -1.1 1,209,066 + +1.8 1,209,187 - +0.1 1,209,195 + +0.4 1,209,211 + +1.1 1,209,219 - -0.3 1,209,284 + -0.5 1,209,303 - Dsui_1154 0.11 -0.3 1,209,357 - Dsui_1154 0.15 +0.1 1,209,394 + Dsui_1154 0.17 +0.4 1,209,427 - Dsui_1154 0.20 +1.4 1,209,505 + Dsui_1154 0.25 +0.6 1,209,505 + Dsui_1154 0.25 +0.0 1,209,596 + Dsui_1154 0.31 -0.6 1,209,596 + Dsui_1154 0.31 +1.0 1,209,604 - Dsui_1154 0.32 +0.9 1,209,717 + +2.1 1,209,724 + Dsui_1154 0.40 +0.5 1,209,814 + Dsui_1154 0.46 +1.4 1,210,009 + Dsui_1154 0.59 -0.9 1,210,009 + Dsui_1154 0.59 +0.1 1,210,009 + +0.5 1,210,037 - Dsui_1154 0.61 +0.3 1,210,044 + Dsui_1154 0.61 +0.4 1,210,186 - Dsui_1154 0.71 -0.0 1,210,283 + Dsui_1154 0.78 +1.3 1,210,366 - Dsui_1154 0.83 -0.1 1,210,368 + Dsui_1154 0.83 +0.5 1,210,411 + Dsui_1154 0.86 +0.0 1,210,639 + +0.6 1,210,639 + +0.7 1,210,647 - -0.3 1,210,647 - -0.6 1,210,678 + +1.2 1,210,709 + +0.1 1,210,928 - Dsui_1155 0.18 -0.1 1,210,941 + Dsui_1155 0.19 -0.8 1,210,966 + -0.8 1,211,266 + Dsui_1155 0.37 +1.2 1,211,276 + +0.1 1,211,283 - Dsui_1155 0.38 -0.3 1,211,342 + Dsui_1155 0.42 -0.2 1,211,401 - Dsui_1155 0.45 +0.7 1,211,530 + Dsui_1155 0.52 -0.5 1,211,552 + Dsui_1155 0.54 -1.3
Or see this region's nucleotide sequence