Strain Fitness in Dechlorosoma suillum PS around Dsui_1154

Experiment: Anaero. lactate (C), perchlorate electron acceptor

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1153 and Dsui_1154 are separated by 139 nucleotidesDsui_1154 and Dsui_1155 are separated by 6 nucleotides Dsui_1153: Dsui_1153 - Ni,Fe-hydrogenase I small subunit, at 1,208,003 to 1,208,998 _1153 Dsui_1154: Dsui_1154 - response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains, at 1,209,138 to 1,210,613 _1154 Dsui_1155: Dsui_1155 - methionyl-tRNA formyltransferase, at 1,210,620 to 1,212,353 _1155 Position (kb) 1209 1210 1211Strain fitness (log2 ratio) -1 0 1 2at 1208.165 kb on - strand, within Dsui_1153at 1208.216 kb on + strand, within Dsui_1153at 1208.269 kb on - strand, within Dsui_1153at 1208.335 kb on + strand, within Dsui_1153at 1208.415 kb on - strand, within Dsui_1153at 1208.562 kb on + strand, within Dsui_1153at 1208.719 kb on - strand, within Dsui_1153at 1209.019 kb on + strandat 1209.038 kb on - strandat 1209.066 kb on + strandat 1209.187 kb on - strandat 1209.195 kb on + strandat 1209.211 kb on + strandat 1209.219 kb on - strandat 1209.284 kb on + strandat 1209.303 kb on - strand, within Dsui_1154at 1209.357 kb on - strand, within Dsui_1154at 1209.394 kb on + strand, within Dsui_1154at 1209.427 kb on - strand, within Dsui_1154at 1209.505 kb on + strand, within Dsui_1154at 1209.505 kb on + strand, within Dsui_1154at 1209.596 kb on + strand, within Dsui_1154at 1209.596 kb on + strand, within Dsui_1154at 1209.604 kb on - strand, within Dsui_1154at 1209.717 kb on + strandat 1209.724 kb on + strand, within Dsui_1154at 1209.814 kb on + strand, within Dsui_1154at 1210.009 kb on + strand, within Dsui_1154at 1210.009 kb on + strand, within Dsui_1154at 1210.009 kb on + strandat 1210.037 kb on - strand, within Dsui_1154at 1210.044 kb on + strand, within Dsui_1154at 1210.186 kb on - strand, within Dsui_1154at 1210.283 kb on + strand, within Dsui_1154at 1210.366 kb on - strand, within Dsui_1154at 1210.368 kb on + strand, within Dsui_1154at 1210.411 kb on + strand, within Dsui_1154at 1210.639 kb on + strandat 1210.639 kb on + strandat 1210.647 kb on - strandat 1210.647 kb on - strandat 1210.678 kb on + strandat 1210.709 kb on + strandat 1210.928 kb on - strand, within Dsui_1155at 1210.941 kb on + strand, within Dsui_1155at 1210.966 kb on + strandat 1211.266 kb on + strand, within Dsui_1155at 1211.276 kb on + strandat 1211.283 kb on - strand, within Dsui_1155at 1211.342 kb on + strand, within Dsui_1155at 1211.401 kb on - strand, within Dsui_1155at 1211.530 kb on + strand, within Dsui_1155at 1211.552 kb on + strand, within Dsui_1155

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaero. lactate (C), perchlorate electron acceptor
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1,208,165 - Dsui_1153 0.16 -0.3
1,208,216 + Dsui_1153 0.21 -0.4
1,208,269 - Dsui_1153 0.27 +0.8
1,208,335 + Dsui_1153 0.33 +1.1
1,208,415 - Dsui_1153 0.41 +1.4
1,208,562 + Dsui_1153 0.56 -0.4
1,208,719 - Dsui_1153 0.72 +0.1
1,209,019 + -0.4
1,209,038 - -1.1
1,209,066 + +1.8
1,209,187 - +0.1
1,209,195 + +0.4
1,209,211 + +1.1
1,209,219 - -0.3
1,209,284 + -0.5
1,209,303 - Dsui_1154 0.11 -0.3
1,209,357 - Dsui_1154 0.15 +0.1
1,209,394 + Dsui_1154 0.17 +0.4
1,209,427 - Dsui_1154 0.20 +1.4
1,209,505 + Dsui_1154 0.25 +0.6
1,209,505 + Dsui_1154 0.25 +0.0
1,209,596 + Dsui_1154 0.31 -0.6
1,209,596 + Dsui_1154 0.31 +1.0
1,209,604 - Dsui_1154 0.32 +0.9
1,209,717 + +2.1
1,209,724 + Dsui_1154 0.40 +0.5
1,209,814 + Dsui_1154 0.46 +1.4
1,210,009 + Dsui_1154 0.59 -0.9
1,210,009 + Dsui_1154 0.59 +0.1
1,210,009 + +0.5
1,210,037 - Dsui_1154 0.61 +0.3
1,210,044 + Dsui_1154 0.61 +0.4
1,210,186 - Dsui_1154 0.71 -0.0
1,210,283 + Dsui_1154 0.78 +1.3
1,210,366 - Dsui_1154 0.83 -0.1
1,210,368 + Dsui_1154 0.83 +0.5
1,210,411 + Dsui_1154 0.86 +0.0
1,210,639 + +0.6
1,210,639 + +0.7
1,210,647 - -0.3
1,210,647 - -0.6
1,210,678 + +1.2
1,210,709 + +0.1
1,210,928 - Dsui_1155 0.18 -0.1
1,210,941 + Dsui_1155 0.19 -0.8
1,210,966 + -0.8
1,211,266 + Dsui_1155 0.37 +1.2
1,211,276 + +0.1
1,211,283 - Dsui_1155 0.38 -0.3
1,211,342 + Dsui_1155 0.42 -0.2
1,211,401 - Dsui_1155 0.45 +0.7
1,211,530 + Dsui_1155 0.52 -0.5
1,211,552 + Dsui_1155 0.54 -1.3

Or see this region's nucleotide sequence