Strain Fitness in Dechlorosoma suillum PS around Dsui_1030

Experiment: Anaero. lactate (C), perchlorate electron acceptor

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1027 and Dsui_1028 overlap by 11 nucleotidesDsui_1028 and Dsui_1029 are separated by 16 nucleotidesDsui_1029 and Dsui_1030 are separated by 78 nucleotidesDsui_1030 and Dsui_1031 are separated by 122 nucleotides Dsui_1027: Dsui_1027 - RNA methyltransferase, RsmD family, at 1,060,172 to 1,060,780 _1027 Dsui_1028: Dsui_1028 - pantetheine-phosphate adenylyltransferase, at 1,060,770 to 1,061,267 _1028 Dsui_1029: Dsui_1029 - hypothetical protein, at 1,061,284 to 1,061,541 _1029 Dsui_1030: Dsui_1030 - dynamin family protein, at 1,061,620 to 1,063,575 _1030 Dsui_1031: Dsui_1031 - formamidopyrimidine-DNA glycosylase Fpg, at 1,063,698 to 1,064,525 _1031 Position (kb) 1061 1062 1063 1064Strain fitness (log2 ratio) -1 0 1 2at 1060.767 kb on - strandat 1060.767 kb on - strandat 1061.638 kb on - strandat 1061.717 kb on + strandat 1061.725 kb on - strandat 1061.764 kb on + strandat 1061.884 kb on - strand, within Dsui_1030at 1061.947 kb on - strand, within Dsui_1030at 1061.983 kb on - strand, within Dsui_1030at 1062.008 kb on - strand, within Dsui_1030at 1062.060 kb on + strand, within Dsui_1030at 1062.060 kb on + strand, within Dsui_1030at 1062.068 kb on - strand, within Dsui_1030at 1062.085 kb on - strand, within Dsui_1030at 1062.153 kb on + strand, within Dsui_1030at 1062.161 kb on - strand, within Dsui_1030at 1062.237 kb on + strand, within Dsui_1030at 1062.299 kb on - strand, within Dsui_1030at 1062.322 kb on - strand, within Dsui_1030at 1062.325 kb on + strand, within Dsui_1030at 1062.356 kb on + strand, within Dsui_1030at 1062.356 kb on + strand, within Dsui_1030at 1062.356 kb on + strand, within Dsui_1030at 1062.364 kb on - strand, within Dsui_1030at 1062.368 kb on + strand, within Dsui_1030at 1062.389 kb on + strand, within Dsui_1030at 1062.389 kb on + strand, within Dsui_1030at 1062.402 kb on - strand, within Dsui_1030at 1062.440 kb on - strand, within Dsui_1030at 1062.497 kb on + strandat 1062.683 kb on - strand, within Dsui_1030at 1062.725 kb on + strand, within Dsui_1030at 1062.779 kb on + strand, within Dsui_1030at 1062.820 kb on + strand, within Dsui_1030at 1062.898 kb on + strand, within Dsui_1030at 1062.938 kb on - strand, within Dsui_1030at 1063.080 kb on - strand, within Dsui_1030at 1063.130 kb on - strand, within Dsui_1030at 1063.143 kb on + strand, within Dsui_1030at 1063.318 kb on + strand, within Dsui_1030at 1063.355 kb on + strand, within Dsui_1030at 1063.365 kb on + strand, within Dsui_1030at 1063.365 kb on + strand, within Dsui_1030at 1063.365 kb on + strand, within Dsui_1030at 1063.365 kb on + strand, within Dsui_1030at 1063.373 kb on - strand, within Dsui_1030at 1063.456 kb on + strandat 1063.481 kb on - strandat 1063.508 kb on + strandat 1063.555 kb on - strandat 1063.560 kb on - strandat 1063.742 kb on + strandat 1063.750 kb on - strandat 1063.815 kb on - strand, within Dsui_1031at 1063.887 kb on + strand, within Dsui_1031at 1064.017 kb on + strand, within Dsui_1031at 1064.071 kb on + strandat 1064.089 kb on - strandat 1064.158 kb on - strand, within Dsui_1031at 1064.184 kb on - strand, within Dsui_1031at 1064.200 kb on - strand, within Dsui_1031at 1064.228 kb on + strand, within Dsui_1031at 1064.371 kb on - strand, within Dsui_1031at 1064.407 kb on + strand, within Dsui_1031at 1064.509 kb on - strandat 1064.562 kb on + strandat 1064.569 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaero. lactate (C), perchlorate electron acceptor
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1,060,767 - +1.6
1,060,767 - +2.6
1,061,638 - +0.2
1,061,717 + +0.6
1,061,725 - +0.6
1,061,764 + +1.3
1,061,884 - Dsui_1030 0.13 +0.9
1,061,947 - Dsui_1030 0.17 -0.5
1,061,983 - Dsui_1030 0.19 +1.0
1,062,008 - Dsui_1030 0.20 -0.5
1,062,060 + Dsui_1030 0.22 +0.5
1,062,060 + Dsui_1030 0.22 +0.4
1,062,068 - Dsui_1030 0.23 +0.8
1,062,085 - Dsui_1030 0.24 +0.8
1,062,153 + Dsui_1030 0.27 +0.4
1,062,161 - Dsui_1030 0.28 +0.8
1,062,237 + Dsui_1030 0.32 +0.7
1,062,299 - Dsui_1030 0.35 +1.1
1,062,322 - Dsui_1030 0.36 +0.2
1,062,325 + Dsui_1030 0.36 +0.0
1,062,356 + Dsui_1030 0.38 +0.5
1,062,356 + Dsui_1030 0.38 -1.5
1,062,356 + Dsui_1030 0.38 -0.6
1,062,364 - Dsui_1030 0.38 -0.6
1,062,368 + Dsui_1030 0.38 +0.6
1,062,389 + Dsui_1030 0.39 +0.0
1,062,389 + Dsui_1030 0.39 +0.0
1,062,402 - Dsui_1030 0.40 -0.1
1,062,440 - Dsui_1030 0.42 +1.8
1,062,497 + +0.5
1,062,683 - Dsui_1030 0.54 +0.7
1,062,725 + Dsui_1030 0.56 -0.1
1,062,779 + Dsui_1030 0.59 +0.6
1,062,820 + Dsui_1030 0.61 +1.2
1,062,898 + Dsui_1030 0.65 -0.3
1,062,938 - Dsui_1030 0.67 +0.8
1,063,080 - Dsui_1030 0.75 +0.3
1,063,130 - Dsui_1030 0.77 +0.4
1,063,143 + Dsui_1030 0.78 +0.3
1,063,318 + Dsui_1030 0.87 +1.1
1,063,355 + Dsui_1030 0.89 -1.3
1,063,365 + Dsui_1030 0.89 -0.5
1,063,365 + Dsui_1030 0.89 +0.8
1,063,365 + Dsui_1030 0.89 +0.4
1,063,365 + Dsui_1030 0.89 +0.5
1,063,373 - Dsui_1030 0.90 +0.2
1,063,456 + +0.5
1,063,481 - +0.3
1,063,508 + -1.5
1,063,555 - +1.6
1,063,560 - +0.6
1,063,742 + +0.0
1,063,750 - +0.7
1,063,815 - Dsui_1031 0.14 +0.6
1,063,887 + Dsui_1031 0.23 -0.4
1,064,017 + Dsui_1031 0.39 +1.6
1,064,071 + +2.0
1,064,089 - +2.4
1,064,158 - Dsui_1031 0.56 -0.2
1,064,184 - Dsui_1031 0.59 -0.0
1,064,200 - Dsui_1031 0.61 -0.5
1,064,228 + Dsui_1031 0.64 -1.5
1,064,371 - Dsui_1031 0.81 -0.9
1,064,407 + Dsui_1031 0.86 +0.3
1,064,509 - +1.3
1,064,562 + -0.3
1,064,569 - +1.2

Or see this region's nucleotide sequence