Experiment: Anaero. lactate (C), perchlorate electron acceptor
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1025 and Dsui_1026 are separated by 14 nucleotides Dsui_1026 and Dsui_1027 overlap by 1 nucleotides Dsui_1027 and Dsui_1028 overlap by 11 nucleotides
Dsui_1025: Dsui_1025 - putative Zn-dependent peptidase, at 1,057,498 to 1,058,865
_1025
Dsui_1026: Dsui_1026 - putative Zn-dependent peptidase, at 1,058,880 to 1,060,172
_1026
Dsui_1027: Dsui_1027 - RNA methyltransferase, RsmD family, at 1,060,172 to 1,060,780
_1027
Dsui_1028: Dsui_1028 - pantetheine-phosphate adenylyltransferase, at 1,060,770 to 1,061,267
_1028
Position (kb)
1058
1059
1060
1061 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1057.942 kb on + strand, within Dsui_1025 at 1057.983 kb on + strand, within Dsui_1025 at 1058.020 kb on + strand, within Dsui_1025 at 1058.072 kb on + strand, within Dsui_1025 at 1058.072 kb on - strand, within Dsui_1025 at 1058.126 kb on + strand, within Dsui_1025 at 1058.228 kb on - strand at 1058.291 kb on - strand, within Dsui_1025 at 1058.317 kb on - strand, within Dsui_1025 at 1058.343 kb on + strand, within Dsui_1025 at 1058.379 kb on - strand at 1058.420 kb on - strand at 1058.426 kb on - strand at 1058.699 kb on + strand, within Dsui_1025 at 1058.785 kb on + strand at 1058.800 kb on - strand at 1058.936 kb on + strand at 1058.959 kb on + strand at 1059.088 kb on + strand, within Dsui_1026 at 1059.199 kb on + strand, within Dsui_1026 at 1059.302 kb on - strand at 1059.479 kb on + strand, within Dsui_1026 at 1059.533 kb on + strand, within Dsui_1026 at 1059.534 kb on + strand, within Dsui_1026 at 1059.693 kb on + strand, within Dsui_1026 at 1059.780 kb on + strand at 1059.788 kb on - strand at 1059.810 kb on - strand, within Dsui_1026 at 1060.111 kb on - strand at 1060.328 kb on - strand at 1060.372 kb on - strand, within Dsui_1027 at 1060.407 kb on + strand, within Dsui_1027 at 1060.460 kb on + strand, within Dsui_1027 at 1060.460 kb on + strand, within Dsui_1027 at 1060.465 kb on + strand, within Dsui_1027 at 1060.551 kb on + strand, within Dsui_1027 at 1060.559 kb on - strand at 1060.767 kb on - strand at 1060.767 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Anaero. lactate (C), perchlorate electron acceptor remove 1,057,942 + Dsui_1025 0.32 -0.4 1,057,983 + Dsui_1025 0.35 -1.5 1,058,020 + Dsui_1025 0.38 -0.8 1,058,072 + Dsui_1025 0.42 -2.2 1,058,072 - Dsui_1025 0.42 -0.3 1,058,126 + Dsui_1025 0.46 -3.0 1,058,228 - +1.0 1,058,291 - Dsui_1025 0.58 +0.2 1,058,317 - Dsui_1025 0.60 +0.8 1,058,343 + Dsui_1025 0.62 -0.8 1,058,379 - +2.0 1,058,420 - +2.0 1,058,426 - -0.3 1,058,699 + Dsui_1025 0.88 -0.7 1,058,785 + -0.8 1,058,800 - -0.8 1,058,936 + -0.4 1,058,959 + -1.0 1,059,088 + Dsui_1026 0.16 +0.3 1,059,199 + Dsui_1026 0.25 -1.8 1,059,302 - +1.0 1,059,479 + Dsui_1026 0.46 -0.7 1,059,533 + Dsui_1026 0.51 -1.5 1,059,534 + Dsui_1026 0.51 -1.0 1,059,693 + Dsui_1026 0.63 +2.0 1,059,780 + +0.5 1,059,788 - -0.5 1,059,810 - Dsui_1026 0.72 -1.1 1,060,111 - +1.0 1,060,328 - +2.0 1,060,372 - Dsui_1027 0.33 +0.7 1,060,407 + Dsui_1027 0.39 -0.8 1,060,460 + Dsui_1027 0.47 -0.7 1,060,460 + Dsui_1027 0.47 +0.3 1,060,465 + Dsui_1027 0.48 -1.0 1,060,551 + Dsui_1027 0.62 -0.4 1,060,559 - +2.6 1,060,767 - +1.6 1,060,767 - +2.6
Or see this region's nucleotide sequence