Strain Fitness in Dechlorosoma suillum PS around Dsui_1026

Experiment: Anaero. lactate (C), perchlorate electron acceptor

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1025 and Dsui_1026 are separated by 14 nucleotidesDsui_1026 and Dsui_1027 overlap by 1 nucleotidesDsui_1027 and Dsui_1028 overlap by 11 nucleotides Dsui_1025: Dsui_1025 - putative Zn-dependent peptidase, at 1,057,498 to 1,058,865 _1025 Dsui_1026: Dsui_1026 - putative Zn-dependent peptidase, at 1,058,880 to 1,060,172 _1026 Dsui_1027: Dsui_1027 - RNA methyltransferase, RsmD family, at 1,060,172 to 1,060,780 _1027 Dsui_1028: Dsui_1028 - pantetheine-phosphate adenylyltransferase, at 1,060,770 to 1,061,267 _1028 Position (kb) 1058 1059 1060 1061Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1057.942 kb on + strand, within Dsui_1025at 1057.983 kb on + strand, within Dsui_1025at 1058.020 kb on + strand, within Dsui_1025at 1058.072 kb on + strand, within Dsui_1025at 1058.072 kb on - strand, within Dsui_1025at 1058.126 kb on + strand, within Dsui_1025at 1058.228 kb on - strandat 1058.291 kb on - strand, within Dsui_1025at 1058.317 kb on - strand, within Dsui_1025at 1058.343 kb on + strand, within Dsui_1025at 1058.379 kb on - strandat 1058.420 kb on - strandat 1058.426 kb on - strandat 1058.699 kb on + strand, within Dsui_1025at 1058.785 kb on + strandat 1058.800 kb on - strandat 1058.936 kb on + strandat 1058.959 kb on + strandat 1059.088 kb on + strand, within Dsui_1026at 1059.199 kb on + strand, within Dsui_1026at 1059.302 kb on - strandat 1059.479 kb on + strand, within Dsui_1026at 1059.533 kb on + strand, within Dsui_1026at 1059.534 kb on + strand, within Dsui_1026at 1059.693 kb on + strand, within Dsui_1026at 1059.780 kb on + strandat 1059.788 kb on - strandat 1059.810 kb on - strand, within Dsui_1026at 1060.111 kb on - strandat 1060.328 kb on - strandat 1060.372 kb on - strand, within Dsui_1027at 1060.407 kb on + strand, within Dsui_1027at 1060.460 kb on + strand, within Dsui_1027at 1060.460 kb on + strand, within Dsui_1027at 1060.465 kb on + strand, within Dsui_1027at 1060.551 kb on + strand, within Dsui_1027at 1060.559 kb on - strandat 1060.767 kb on - strandat 1060.767 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaero. lactate (C), perchlorate electron acceptor
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1,057,942 + Dsui_1025 0.32 -0.4
1,057,983 + Dsui_1025 0.35 -1.5
1,058,020 + Dsui_1025 0.38 -0.8
1,058,072 + Dsui_1025 0.42 -2.2
1,058,072 - Dsui_1025 0.42 -0.3
1,058,126 + Dsui_1025 0.46 -3.0
1,058,228 - +1.0
1,058,291 - Dsui_1025 0.58 +0.2
1,058,317 - Dsui_1025 0.60 +0.8
1,058,343 + Dsui_1025 0.62 -0.8
1,058,379 - +2.0
1,058,420 - +2.0
1,058,426 - -0.3
1,058,699 + Dsui_1025 0.88 -0.7
1,058,785 + -0.8
1,058,800 - -0.8
1,058,936 + -0.4
1,058,959 + -1.0
1,059,088 + Dsui_1026 0.16 +0.3
1,059,199 + Dsui_1026 0.25 -1.8
1,059,302 - +1.0
1,059,479 + Dsui_1026 0.46 -0.7
1,059,533 + Dsui_1026 0.51 -1.5
1,059,534 + Dsui_1026 0.51 -1.0
1,059,693 + Dsui_1026 0.63 +2.0
1,059,780 + +0.5
1,059,788 - -0.5
1,059,810 - Dsui_1026 0.72 -1.1
1,060,111 - +1.0
1,060,328 - +2.0
1,060,372 - Dsui_1027 0.33 +0.7
1,060,407 + Dsui_1027 0.39 -0.8
1,060,460 + Dsui_1027 0.47 -0.7
1,060,460 + Dsui_1027 0.47 +0.3
1,060,465 + Dsui_1027 0.48 -1.0
1,060,551 + Dsui_1027 0.62 -0.4
1,060,559 - +2.6
1,060,767 - +1.6
1,060,767 - +2.6

Or see this region's nucleotide sequence