Experiment: Anaero. lactate (C), perchlorate electron acceptor
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0809 and Dsui_0810 are separated by 23 nucleotides Dsui_0810 and Dsui_0811 overlap by 4 nucleotides Dsui_0811 and Dsui_0812 overlap by 41 nucleotides
Dsui_0809: Dsui_0809 - response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains, at 819,386 to 820,642
_0809
Dsui_0810: Dsui_0810 - signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation, at 820,666 to 822,786
_0810
Dsui_0811: Dsui_0811 - hypothetical protein, at 822,783 to 823,391
_0811
Dsui_0812: Dsui_0812 - ribosomal RNA small subunit methyltransferase RsmB, at 823,351 to 824,688
_0812
Position (kb) 820
821
822
823 Strain fitness (log2 ratio) -2
-1
0
1
2 at 820.675 kb on + strand at 821.337 kb on + strand, within Dsui_0810 at 821.598 kb on + strand, within Dsui_0810 at 821.663 kb on + strand, within Dsui_0810 at 821.663 kb on + strand, within Dsui_0810 at 821.690 kb on + strand, within Dsui_0810 at 821.722 kb on + strand, within Dsui_0810 at 821.722 kb on + strand, within Dsui_0810 at 821.782 kb on + strand, within Dsui_0810 at 821.806 kb on + strand, within Dsui_0810 at 821.847 kb on + strand, within Dsui_0810 at 821.963 kb on + strand, within Dsui_0810 at 822.000 kb on + strand, within Dsui_0810 at 822.137 kb on - strand, within Dsui_0810 at 822.159 kb on + strand, within Dsui_0810 at 822.167 kb on - strand, within Dsui_0810 at 822.182 kb on + strand, within Dsui_0810 at 822.260 kb on + strand, within Dsui_0810 at 822.368 kb on - strand, within Dsui_0810 at 822.408 kb on + strand, within Dsui_0810 at 822.686 kb on + strand at 822.686 kb on + strand at 822.694 kb on - strand at 822.759 kb on - strand at 822.795 kb on + strand at 822.806 kb on + strand at 822.870 kb on + strand, within Dsui_0811 at 822.892 kb on + strand, within Dsui_0811 at 822.892 kb on + strand, within Dsui_0811 at 822.902 kb on + strand, within Dsui_0811 at 822.911 kb on + strand, within Dsui_0811 at 822.952 kb on + strand, within Dsui_0811 at 822.952 kb on + strand, within Dsui_0811 at 822.970 kb on - strand, within Dsui_0811 at 822.980 kb on - strand, within Dsui_0811 at 823.027 kb on - strand, within Dsui_0811 at 823.054 kb on + strand, within Dsui_0811 at 823.065 kb on + strand, within Dsui_0811 at 823.189 kb on + strand, within Dsui_0811 at 823.255 kb on - strand, within Dsui_0811 at 823.256 kb on - strand, within Dsui_0811 at 823.282 kb on - strand, within Dsui_0811 at 823.282 kb on - strand, within Dsui_0811 at 823.297 kb on - strand, within Dsui_0811 at 823.356 kb on - strand at 823.379 kb on - strand at 823.379 kb on - strand at 823.379 kb on - strand at 823.392 kb on - strand at 823.400 kb on - strand at 823.403 kb on + strand at 823.467 kb on + strand at 823.479 kb on + strand at 823.479 kb on + strand at 823.487 kb on - strand, within Dsui_0812 at 823.522 kb on + strand, within Dsui_0812 at 823.525 kb on - strand, within Dsui_0812 at 823.539 kb on + strand, within Dsui_0812 at 823.578 kb on - strand, within Dsui_0812 at 823.685 kb on - strand, within Dsui_0812 at 823.706 kb on - strand, within Dsui_0812 at 823.708 kb on - strand, within Dsui_0812 at 823.723 kb on + strand, within Dsui_0812 at 823.752 kb on + strand, within Dsui_0812 at 823.752 kb on + strand, within Dsui_0812
Per-strain Table
Position Strand Gene LocusTag Fraction Anaero. lactate (C), perchlorate electron acceptor remove 820,675 + -0.5 821,337 + Dsui_0810 0.32 -2.1 821,598 + Dsui_0810 0.44 -1.2 821,663 + Dsui_0810 0.47 -1.1 821,663 + Dsui_0810 0.47 -1.7 821,690 + Dsui_0810 0.48 -1.3 821,722 + Dsui_0810 0.50 -0.4 821,722 + Dsui_0810 0.50 -1.5 821,782 + Dsui_0810 0.53 -0.6 821,806 + Dsui_0810 0.54 -1.8 821,847 + Dsui_0810 0.56 -0.9 821,963 + Dsui_0810 0.61 -0.3 822,000 + Dsui_0810 0.63 -2.2 822,137 - Dsui_0810 0.69 +0.5 822,159 + Dsui_0810 0.70 -0.9 822,167 - Dsui_0810 0.71 +0.1 822,182 + Dsui_0810 0.71 -0.2 822,260 + Dsui_0810 0.75 -1.1 822,368 - Dsui_0810 0.80 -1.1 822,408 + Dsui_0810 0.82 -1.4 822,686 + -0.0 822,686 + +0.2 822,694 - -0.8 822,759 - +0.9 822,795 + +0.5 822,806 + -1.1 822,870 + Dsui_0811 0.14 -0.9 822,892 + Dsui_0811 0.18 -0.5 822,892 + Dsui_0811 0.18 -0.1 822,902 + Dsui_0811 0.20 -0.9 822,911 + Dsui_0811 0.21 -0.4 822,952 + Dsui_0811 0.28 -0.4 822,952 + Dsui_0811 0.28 -0.6 822,970 - Dsui_0811 0.31 -1.2 822,980 - Dsui_0811 0.32 -0.1 823,027 - Dsui_0811 0.40 -1.4 823,054 + Dsui_0811 0.44 +0.1 823,065 + Dsui_0811 0.46 -0.9 823,189 + Dsui_0811 0.67 -1.1 823,255 - Dsui_0811 0.78 -2.4 823,256 - Dsui_0811 0.78 -0.6 823,282 - Dsui_0811 0.82 +0.9 823,282 - Dsui_0811 0.82 +1.9 823,297 - Dsui_0811 0.84 +0.4 823,356 - -0.4 823,379 - +0.2 823,379 - -1.5 823,379 - -0.1 823,392 - -0.3 823,400 - -0.2 823,403 + -1.8 823,467 + -0.6 823,479 + +0.9 823,479 + -0.1 823,487 - Dsui_0812 0.10 +0.1 823,522 + Dsui_0812 0.13 -0.8 823,525 - Dsui_0812 0.13 -1.0 823,539 + Dsui_0812 0.14 +1.9 823,578 - Dsui_0812 0.17 -0.5 823,685 - Dsui_0812 0.25 -0.5 823,706 - Dsui_0812 0.27 -0.1 823,708 - Dsui_0812 0.27 -1.1 823,723 + Dsui_0812 0.28 -0.9 823,752 + Dsui_0812 0.30 -1.4 823,752 + Dsui_0812 0.30 -0.1
Or see this region's nucleotide sequence