Experiment: Anaero. lactate (C), perchlorate electron acceptor
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0308 and Dsui_0309 are separated by 2 nucleotides Dsui_0309 and Dsui_0310 are separated by 50 nucleotides Dsui_0310 and Dsui_0311 are separated by 99 nucleotides
Dsui_0308: Dsui_0308 - Major Facilitator Superfamily transporter, at 309,826 to 311,151
_0308
Dsui_0309: Dsui_0309 - DNA/RNA helicase, superfamily II, at 311,154 to 312,485
_0309
Dsui_0310: Dsui_0310 - acyl-CoA hydrolase, at 312,536 to 313,036
_0310
Dsui_0311: Dsui_0311 - ATP-dependent DNA helicase RecG, at 313,136 to 315,211
_0311
Position (kb) 311
312
313 Strain fitness (log2 ratio) -1
0
1
2 at 310.155 kb on + strand at 310.286 kb on - strand, within Dsui_0308 at 310.292 kb on + strand, within Dsui_0308 at 310.389 kb on + strand at 310.427 kb on + strand at 310.790 kb on - strand, within Dsui_0308 at 310.871 kb on - strand, within Dsui_0308 at 310.932 kb on + strand, within Dsui_0308 at 310.965 kb on + strand at 311.155 kb on - strand at 311.160 kb on + strand at 311.274 kb on + strand at 311.329 kb on - strand, within Dsui_0309 at 311.334 kb on + strand, within Dsui_0309 at 311.335 kb on + strand at 311.365 kb on - strand, within Dsui_0309 at 311.397 kb on + strand at 311.413 kb on - strand, within Dsui_0309 at 311.437 kb on + strand, within Dsui_0309 at 311.525 kb on + strand at 311.569 kb on + strand, within Dsui_0309 at 311.611 kb on + strand, within Dsui_0309 at 311.652 kb on - strand, within Dsui_0309 at 311.698 kb on + strand, within Dsui_0309 at 311.719 kb on + strand, within Dsui_0309 at 311.776 kb on + strand at 311.776 kb on + strand at 311.783 kb on + strand, within Dsui_0309 at 311.861 kb on + strand at 311.896 kb on + strand, within Dsui_0309 at 311.896 kb on + strand at 311.941 kb on + strand at 312.073 kb on - strand, within Dsui_0309 at 312.108 kb on + strand, within Dsui_0309 at 312.108 kb on + strand at 312.115 kb on + strand, within Dsui_0309 at 312.116 kb on - strand, within Dsui_0309 at 312.181 kb on + strand, within Dsui_0309 at 312.394 kb on + strand at 312.488 kb on - strand at 312.488 kb on - strand at 312.491 kb on + strand at 312.750 kb on + strand, within Dsui_0310 at 312.805 kb on + strand, within Dsui_0310 at 312.805 kb on + strand at 312.876 kb on - strand, within Dsui_0310 at 312.917 kb on + strand at 312.925 kb on - strand, within Dsui_0310 at 312.925 kb on - strand, within Dsui_0310 at 312.925 kb on - strand, within Dsui_0310 at 312.925 kb on - strand, within Dsui_0310 at 312.947 kb on - strand, within Dsui_0310 at 313.031 kb on + strand at 313.064 kb on + strand at 313.080 kb on - strand at 313.100 kb on + strand at 313.124 kb on - strand at 313.140 kb on + strand at 313.148 kb on - strand at 313.153 kb on + strand at 313.224 kb on + strand at 313.267 kb on + strand at 313.267 kb on + strand at 313.295 kb on + strand at 313.370 kb on - strand, within Dsui_0311 at 313.412 kb on - strand, within Dsui_0311
Per-strain Table
Position Strand Gene LocusTag Fraction Anaero. lactate (C), perchlorate electron acceptor remove 310,155 + +1.6 310,286 - Dsui_0308 0.35 -0.9 310,292 + Dsui_0308 0.35 -0.1 310,389 + +2.6 310,427 + +1.0 310,790 - Dsui_0308 0.73 -0.5 310,871 - Dsui_0308 0.79 -0.1 310,932 + Dsui_0308 0.83 +0.9 310,965 + +1.4 311,155 - -0.4 311,160 + +2.0 311,274 + +0.2 311,329 - Dsui_0309 0.13 +0.6 311,334 + Dsui_0309 0.14 +0.1 311,335 + +0.0 311,365 - Dsui_0309 0.16 +0.8 311,397 + +0.0 311,413 - Dsui_0309 0.19 +2.0 311,437 + Dsui_0309 0.21 +1.2 311,525 + +2.0 311,569 + Dsui_0309 0.31 +0.4 311,611 + Dsui_0309 0.34 +0.4 311,652 - Dsui_0309 0.37 +1.8 311,698 + Dsui_0309 0.41 -0.3 311,719 + Dsui_0309 0.42 +0.0 311,776 + +2.4 311,776 + +2.0 311,783 + Dsui_0309 0.47 +0.1 311,861 + +0.2 311,896 + Dsui_0309 0.56 +1.3 311,896 + -0.3 311,941 + -0.3 312,073 - Dsui_0309 0.69 +0.4 312,108 + Dsui_0309 0.72 -1.0 312,108 + +0.7 312,115 + Dsui_0309 0.72 +0.8 312,116 - Dsui_0309 0.72 +0.9 312,181 + Dsui_0309 0.77 +0.4 312,394 + -0.1 312,488 - -0.6 312,488 - +0.2 312,491 + +0.4 312,750 + Dsui_0310 0.43 +0.3 312,805 + Dsui_0310 0.54 -0.2 312,805 + +1.0 312,876 - Dsui_0310 0.68 -0.0 312,917 + +1.0 312,925 - Dsui_0310 0.78 +0.2 312,925 - Dsui_0310 0.78 +0.8 312,925 - Dsui_0310 0.78 +0.1 312,925 - Dsui_0310 0.78 +1.5 312,947 - Dsui_0310 0.82 +0.4 313,031 + +2.0 313,064 + +2.0 313,080 - +0.2 313,100 + +1.0 313,124 - -0.2 313,140 + +1.0 313,148 - -0.3 313,153 + +0.1 313,224 + +0.0 313,267 + -0.2 313,267 + +0.0 313,295 + -1.0 313,370 - Dsui_0311 0.11 +0.2 313,412 - Dsui_0311 0.13 +0.7
Or see this region's nucleotide sequence