Experiment: Anaero. lactate (C), perchlorate electron acceptor
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0122 and Dsui_0123 are separated by 3 nucleotides Dsui_0123 and Dsui_0124 are separated by 9 nucleotides Dsui_0124 and Dsui_0125 are separated by 4 nucleotides Dsui_0125 and Dsui_0126 are separated by 108 nucleotides
Dsui_0122: Dsui_0122 - D-tyrosyl-tRNA(Tyr) deacylase, at 120,494 to 120,964
_0122
Dsui_0123: Dsui_0123 - hypothetical protein, at 120,968 to 121,624
_0123
Dsui_0124: Dsui_0124 - lactate dehydrogenase-like oxidoreductase, at 121,634 to 122,602
_0124
Dsui_0125: Dsui_0125 - NAD-dependent aldehyde dehydrogenase, at 122,607 to 123,344
_0125
Dsui_0126: Dsui_0126 - (4Fe-4S) cluster-containing protein, at 123,453 to 124,892
_0126
Position (kb)
121
122
123 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 120.714 kb on - strand, within Dsui_0122 at 120.745 kb on + strand at 120.753 kb on - strand, within Dsui_0122 at 120.889 kb on - strand, within Dsui_0122 at 120.907 kb on + strand at 120.974 kb on - strand at 120.974 kb on - strand at 121.029 kb on - strand at 121.036 kb on - strand, within Dsui_0123 at 121.052 kb on + strand, within Dsui_0123 at 121.138 kb on - strand, within Dsui_0123 at 121.149 kb on - strand, within Dsui_0123 at 121.219 kb on + strand, within Dsui_0123 at 121.219 kb on + strand at 121.219 kb on + strand at 121.250 kb on + strand, within Dsui_0123 at 121.265 kb on + strand at 121.399 kb on - strand, within Dsui_0123 at 121.445 kb on - strand, within Dsui_0123 at 121.518 kb on - strand, within Dsui_0123 at 121.683 kb on + strand at 121.683 kb on + strand at 121.691 kb on - strand at 121.710 kb on + strand at 121.736 kb on + strand at 121.737 kb on + strand at 121.783 kb on + strand, within Dsui_0124 at 121.783 kb on + strand at 121.791 kb on - strand, within Dsui_0124 at 121.842 kb on - strand, within Dsui_0124 at 121.935 kb on - strand, within Dsui_0124 at 121.935 kb on - strand, within Dsui_0124 at 121.997 kb on + strand, within Dsui_0124 at 122.005 kb on - strand, within Dsui_0124 at 122.043 kb on + strand at 122.043 kb on - strand, within Dsui_0124 at 122.065 kb on - strand, within Dsui_0124 at 122.105 kb on + strand, within Dsui_0124 at 122.126 kb on + strand at 122.139 kb on - strand, within Dsui_0124 at 122.155 kb on + strand, within Dsui_0124 at 122.155 kb on + strand at 122.156 kb on + strand at 122.217 kb on - strand, within Dsui_0124 at 122.252 kb on + strand, within Dsui_0124 at 122.281 kb on - strand, within Dsui_0124 at 122.314 kb on - strand, within Dsui_0124 at 122.315 kb on - strand, within Dsui_0124 at 122.341 kb on - strand, within Dsui_0124 at 122.359 kb on - strand, within Dsui_0124 at 122.361 kb on + strand, within Dsui_0124 at 122.449 kb on - strand, within Dsui_0124 at 122.519 kb on - strand at 122.526 kb on + strand at 122.534 kb on - strand at 122.605 kb on + strand at 122.655 kb on - strand at 122.675 kb on - strand at 122.872 kb on - strand, within Dsui_0125 at 122.896 kb on + strand at 123.218 kb on + strand at 123.241 kb on - strand, within Dsui_0125 at 123.272 kb on - strand at 123.282 kb on - strand at 123.287 kb on - strand at 123.315 kb on + strand at 123.317 kb on - strand at 123.331 kb on + strand at 123.360 kb on - strand at 123.395 kb on - strand at 123.427 kb on + strand at 123.446 kb on - strand at 123.451 kb on + strand at 123.459 kb on - strand at 123.493 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Anaero. lactate (C), perchlorate electron acceptor remove 120,714 - Dsui_0122 0.47 +0.3 120,745 + +2.1 120,753 - Dsui_0122 0.55 -0.4 120,889 - Dsui_0122 0.84 -1.8 120,907 + +0.5 120,974 - -0.2 120,974 - -0.0 121,029 - -0.2 121,036 - Dsui_0123 0.10 -0.5 121,052 + Dsui_0123 0.13 -0.7 121,138 - Dsui_0123 0.26 -0.3 121,149 - Dsui_0123 0.28 -0.3 121,219 + Dsui_0123 0.38 +1.5 121,219 + +2.1 121,219 + +2.1 121,250 + Dsui_0123 0.43 -1.2 121,265 + +0.5 121,399 - Dsui_0123 0.66 -1.6 121,445 - Dsui_0123 0.73 -0.2 121,518 - Dsui_0123 0.84 +0.2 121,683 + +0.8 121,683 + +1.1 121,691 - -0.2 121,710 + +1.7 121,736 + +2.1 121,737 + +1.1 121,783 + Dsui_0124 0.15 -0.1 121,783 + +3.1 121,791 - Dsui_0124 0.16 +1.1 121,842 - Dsui_0124 0.21 +1.0 121,935 - Dsui_0124 0.31 -0.5 121,935 - Dsui_0124 0.31 +0.5 121,997 + Dsui_0124 0.37 +0.8 122,005 - Dsui_0124 0.38 -0.3 122,043 + +1.7 122,043 - Dsui_0124 0.42 +1.1 122,065 - Dsui_0124 0.44 -1.6 122,105 + Dsui_0124 0.49 +0.7 122,126 + +0.1 122,139 - Dsui_0124 0.52 +0.6 122,155 + Dsui_0124 0.54 -0.0 122,155 + -0.2 122,156 + +0.5 122,217 - Dsui_0124 0.60 -0.0 122,252 + Dsui_0124 0.64 -0.1 122,281 - Dsui_0124 0.67 +0.3 122,314 - Dsui_0124 0.70 +0.1 122,315 - Dsui_0124 0.70 -0.4 122,341 - Dsui_0124 0.73 -0.1 122,359 - Dsui_0124 0.75 +0.7 122,361 + Dsui_0124 0.75 -0.1 122,449 - Dsui_0124 0.84 +0.5 122,519 - +0.9 122,526 + +1.5 122,534 - +1.1 122,605 + +1.1 122,655 - +0.4 122,675 - +0.6 122,872 - Dsui_0125 0.36 -0.0 122,896 + +1.1 123,218 + +2.1 123,241 - Dsui_0125 0.86 +0.7 123,272 - -0.2 123,282 - +0.8 123,287 - +0.2 123,315 + +1.1 123,317 - -0.7 123,331 + -0.9 123,360 - +1.1 123,395 - +1.2 123,427 + -0.2 123,446 - +0.5 123,451 + +1.4 123,459 - +0.7 123,493 + -1.1
Or see this region's nucleotide sequence