Strain Fitness in Dechlorosoma suillum PS around Dsui_0086

Experiment: Anaero. lactate (C), perchlorate electron acceptor

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_0085 and Dsui_0086 are separated by 14 nucleotidesDsui_0086 and Dsui_0087 overlap by 4 nucleotides Dsui_0085: Dsui_0085 - GDP-mannose 4,6-dehydratase, at 83,344 to 84,435 _0085 Dsui_0086: Dsui_0086 - nucleoside-diphosphate-sugar epimerase, at 84,450 to 85,421 _0086 Dsui_0087: Dsui_0087 - mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase, at 85,418 to 86,854 _0087 Position (kb) 84 85 86Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 83.535 kb on - strand, within Dsui_0085at 83.577 kb on - strand, within Dsui_0085at 83.607 kb on - strand, within Dsui_0085at 83.630 kb on - strand, within Dsui_0085at 83.654 kb on + strand, within Dsui_0085at 83.655 kb on - strand, within Dsui_0085at 83.659 kb on + strand, within Dsui_0085at 83.659 kb on + strand, within Dsui_0085at 83.665 kb on - strand, within Dsui_0085at 83.667 kb on - strand, within Dsui_0085at 83.747 kb on + strand, within Dsui_0085at 83.762 kb on + strand, within Dsui_0085at 83.773 kb on + strand, within Dsui_0085at 83.795 kb on + strand, within Dsui_0085at 83.796 kb on - strand, within Dsui_0085at 83.802 kb on + strand, within Dsui_0085at 83.804 kb on - strand, within Dsui_0085at 83.864 kb on - strand, within Dsui_0085at 83.885 kb on + strand, within Dsui_0085at 83.893 kb on + strand, within Dsui_0085at 83.893 kb on + strand, within Dsui_0085at 83.894 kb on - strand, within Dsui_0085at 83.895 kb on + strand, within Dsui_0085at 83.901 kb on - strand, within Dsui_0085at 83.916 kb on - strand, within Dsui_0085at 83.939 kb on + strand, within Dsui_0085at 83.939 kb on + strand, within Dsui_0085at 83.947 kb on - strand, within Dsui_0085at 83.947 kb on - strand, within Dsui_0085at 83.947 kb on - strand, within Dsui_0085at 83.947 kb on - strand, within Dsui_0085at 83.947 kb on - strand, within Dsui_0085at 83.947 kb on - strand, within Dsui_0085at 83.958 kb on + strandat 83.958 kb on + strand, within Dsui_0085at 83.964 kb on - strand, within Dsui_0085at 83.966 kb on - strand, within Dsui_0085at 84.009 kb on + strand, within Dsui_0085at 84.024 kb on + strand, within Dsui_0085at 84.024 kb on + strand, within Dsui_0085at 84.024 kb on + strandat 84.032 kb on - strand, within Dsui_0085at 84.032 kb on - strand, within Dsui_0085at 84.032 kb on - strand, within Dsui_0085at 84.032 kb on - strand, within Dsui_0085at 84.032 kb on - strand, within Dsui_0085at 84.084 kb on + strand, within Dsui_0085at 84.102 kb on + strand, within Dsui_0085at 84.108 kb on - strand, within Dsui_0085at 84.110 kb on - strand, within Dsui_0085at 84.124 kb on + strand, within Dsui_0085at 84.145 kb on + strand, within Dsui_0085at 84.160 kb on + strand, within Dsui_0085at 84.160 kb on + strand, within Dsui_0085at 84.168 kb on - strand, within Dsui_0085at 84.168 kb on - strand, within Dsui_0085at 84.219 kb on + strand, within Dsui_0085at 84.219 kb on + strand, within Dsui_0085at 84.219 kb on + strand, within Dsui_0085at 84.219 kb on + strand, within Dsui_0085at 84.219 kb on + strand, within Dsui_0085at 84.219 kb on + strand, within Dsui_0085at 84.219 kb on + strand, within Dsui_0085at 84.219 kb on + strand, within Dsui_0085at 84.227 kb on - strand, within Dsui_0085at 84.227 kb on - strand, within Dsui_0085at 84.227 kb on - strand, within Dsui_0085at 84.227 kb on - strand, within Dsui_0085at 84.227 kb on - strand, within Dsui_0085at 84.227 kb on - strand, within Dsui_0085at 84.292 kb on - strand, within Dsui_0085at 84.293 kb on - strand, within Dsui_0085at 84.308 kb on + strand, within Dsui_0085at 84.345 kb on + strandat 84.347 kb on + strandat 84.347 kb on + strandat 84.354 kb on - strandat 84.355 kb on - strandat 84.378 kb on + strandat 84.382 kb on + strandat 84.404 kb on + strandat 84.412 kb on - strandat 84.425 kb on + strandat 84.439 kb on + strandat 84.439 kb on + strandat 84.447 kb on - strandat 84.447 kb on - strandat 84.483 kb on + strandat 84.483 kb on + strandat 84.491 kb on - strandat 84.491 kb on - strandat 84.491 kb on - strandat 84.501 kb on + strandat 84.545 kb on + strandat 84.545 kb on + strandat 84.581 kb on - strand, within Dsui_0086at 84.690 kb on + strand, within Dsui_0086at 84.765 kb on - strand, within Dsui_0086at 84.773 kb on + strand, within Dsui_0086at 84.804 kb on + strand, within Dsui_0086at 84.804 kb on + strand, within Dsui_0086at 84.843 kb on - strand, within Dsui_0086at 84.858 kb on + strand, within Dsui_0086at 84.858 kb on + strand, within Dsui_0086at 84.907 kb on + strand, within Dsui_0086at 84.959 kb on - strand, within Dsui_0086at 84.977 kb on + strand, within Dsui_0086at 84.985 kb on - strand, within Dsui_0086at 84.985 kb on - strand, within Dsui_0086at 85.022 kb on + strand, within Dsui_0086at 85.022 kb on + strand, within Dsui_0086at 85.030 kb on - strand, within Dsui_0086at 85.030 kb on - strand, within Dsui_0086at 85.030 kb on - strand, within Dsui_0086at 85.030 kb on - strand, within Dsui_0086at 85.030 kb on - strand, within Dsui_0086at 85.030 kb on - strand, within Dsui_0086at 85.040 kb on + strandat 85.048 kb on - strand, within Dsui_0086at 85.073 kb on + strand, within Dsui_0086at 85.073 kb on + strand, within Dsui_0086at 85.164 kb on - strand, within Dsui_0086at 85.187 kb on + strand, within Dsui_0086at 85.218 kb on - strand, within Dsui_0086at 85.231 kb on + strand, within Dsui_0086at 85.326 kb on - strandat 85.422 kb on - strandat 85.442 kb on - strandat 85.488 kb on - strandat 85.538 kb on + strandat 85.566 kb on - strand, within Dsui_0087at 85.566 kb on - strand, within Dsui_0087at 85.631 kb on - strand, within Dsui_0087at 85.734 kb on - strand, within Dsui_0087at 85.743 kb on - strand, within Dsui_0087at 85.788 kb on + strand, within Dsui_0087at 85.796 kb on - strand, within Dsui_0087at 85.826 kb on - strand, within Dsui_0087at 85.826 kb on - strand, within Dsui_0087at 85.833 kb on + strand, within Dsui_0087at 85.833 kb on + strand, within Dsui_0087at 85.836 kb on - strand, within Dsui_0087at 85.841 kb on - strand, within Dsui_0087at 85.861 kb on + strand, within Dsui_0087at 85.903 kb on - strand, within Dsui_0087at 86.184 kb on + strand, within Dsui_0087at 86.218 kb on + strand, within Dsui_0087at 86.284 kb on + strand, within Dsui_0087at 86.292 kb on - strand, within Dsui_0087at 86.394 kb on - strand, within Dsui_0087

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaero. lactate (C), perchlorate electron acceptor
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83,535 - Dsui_0085 0.17 -2.2
83,577 - Dsui_0085 0.21 -3.6
83,607 - Dsui_0085 0.24 -2.4
83,630 - Dsui_0085 0.26 -2.2
83,654 + Dsui_0085 0.28 -2.6
83,655 - Dsui_0085 0.28 -3.6
83,659 + Dsui_0085 0.29 -2.1
83,659 + Dsui_0085 0.29 -3.0
83,665 - Dsui_0085 0.29 -2.3
83,667 - Dsui_0085 0.30 -3.7
83,747 + Dsui_0085 0.37 -2.2
83,762 + Dsui_0085 0.38 -0.9
83,773 + Dsui_0085 0.39 -3.3
83,795 + Dsui_0085 0.41 -1.2
83,796 - Dsui_0085 0.41 -0.8
83,802 + Dsui_0085 0.42 -2.1
83,804 - Dsui_0085 0.42 -2.2
83,864 - Dsui_0085 0.48 -2.5
83,885 + Dsui_0085 0.50 -4.2
83,893 + Dsui_0085 0.50 -1.8
83,893 + Dsui_0085 0.50 -1.6
83,894 - Dsui_0085 0.50 -2.8
83,895 + Dsui_0085 0.50 -1.2
83,901 - Dsui_0085 0.51 -2.1
83,916 - Dsui_0085 0.52 -2.3
83,939 + Dsui_0085 0.54 -1.2
83,939 + Dsui_0085 0.54 -1.0
83,947 - Dsui_0085 0.55 -3.5
83,947 - Dsui_0085 0.55 -2.8
83,947 - Dsui_0085 0.55 -3.6
83,947 - Dsui_0085 0.55 -2.6
83,947 - Dsui_0085 0.55 -1.9
83,947 - Dsui_0085 0.55 -1.4
83,958 + +0.1
83,958 + Dsui_0085 0.56 -1.4
83,964 - Dsui_0085 0.57 -2.6
83,966 - Dsui_0085 0.57 -2.7
84,009 + Dsui_0085 0.61 -1.2
84,024 + Dsui_0085 0.62 -2.7
84,024 + Dsui_0085 0.62 -0.3
84,024 + +1.1
84,032 - Dsui_0085 0.63 -1.7
84,032 - Dsui_0085 0.63 -1.1
84,032 - Dsui_0085 0.63 -2.0
84,032 - Dsui_0085 0.63 -1.9
84,032 - Dsui_0085 0.63 -1.3
84,084 + Dsui_0085 0.68 -2.4
84,102 + Dsui_0085 0.69 -1.6
84,108 - Dsui_0085 0.70 -1.1
84,110 - Dsui_0085 0.70 -3.7
84,124 + Dsui_0085 0.71 -2.4
84,145 + Dsui_0085 0.73 -0.5
84,160 + Dsui_0085 0.75 -0.8
84,160 + Dsui_0085 0.75 -2.1
84,168 - Dsui_0085 0.75 -2.7
84,168 - Dsui_0085 0.75 -3.5
84,219 + Dsui_0085 0.80 -3.6
84,219 + Dsui_0085 0.80 -2.6
84,219 + Dsui_0085 0.80 -3.2
84,219 + Dsui_0085 0.80 -1.6
84,219 + Dsui_0085 0.80 -0.7
84,219 + Dsui_0085 0.80 -2.4
84,219 + Dsui_0085 0.80 -3.1
84,219 + Dsui_0085 0.80 -1.1
84,227 - Dsui_0085 0.81 -1.4
84,227 - Dsui_0085 0.81 -2.2
84,227 - Dsui_0085 0.81 -2.3
84,227 - Dsui_0085 0.81 -3.3
84,227 - Dsui_0085 0.81 -1.8
84,227 - Dsui_0085 0.81 -2.9
84,292 - Dsui_0085 0.87 -3.1
84,293 - Dsui_0085 0.87 -2.8
84,308 + Dsui_0085 0.88 -2.5
84,345 + -4.5
84,347 + -0.8
84,347 + -1.5
84,354 - -2.3
84,355 - -2.4
84,378 + -2.2
84,382 + -2.2
84,404 + -2.4
84,412 - -1.8
84,425 + -1.3
84,439 + -1.1
84,439 + -1.1
84,447 - -0.3
84,447 - +0.8
84,483 + -2.1
84,483 + +0.1
84,491 - -4.4
84,491 - -2.6
84,491 - -3.0
84,501 + -0.5
84,545 + -2.1
84,545 + +0.5
84,581 - Dsui_0086 0.13 -2.8
84,690 + Dsui_0086 0.25 -2.0
84,765 - Dsui_0086 0.32 -2.2
84,773 + Dsui_0086 0.33 -2.3
84,804 + Dsui_0086 0.36 -1.5
84,804 + Dsui_0086 0.36 -0.8
84,843 - Dsui_0086 0.40 -3.1
84,858 + Dsui_0086 0.42 -1.2
84,858 + Dsui_0086 0.42 -1.4
84,907 + Dsui_0086 0.47 -0.2
84,959 - Dsui_0086 0.52 -2.0
84,977 + Dsui_0086 0.54 -1.8
84,985 - Dsui_0086 0.55 -1.9
84,985 - Dsui_0086 0.55 -1.5
85,022 + Dsui_0086 0.59 -2.2
85,022 + Dsui_0086 0.59 -0.2
85,030 - Dsui_0086 0.60 -1.2
85,030 - Dsui_0086 0.60 -3.0
85,030 - Dsui_0086 0.60 -1.1
85,030 - Dsui_0086 0.60 -2.4
85,030 - Dsui_0086 0.60 -2.2
85,030 - Dsui_0086 0.60 -1.8
85,040 + +1.5
85,048 - Dsui_0086 0.62 -2.7
85,073 + Dsui_0086 0.64 -3.0
85,073 + Dsui_0086 0.64 -1.6
85,164 - Dsui_0086 0.73 -2.1
85,187 + Dsui_0086 0.76 -2.4
85,218 - Dsui_0086 0.79 -2.5
85,231 + Dsui_0086 0.80 -2.1
85,326 - -1.5
85,422 - +0.0
85,442 - -0.8
85,488 - -0.6
85,538 + -0.5
85,566 - Dsui_0087 0.10 -2.8
85,566 - Dsui_0087 0.10 -2.5
85,631 - Dsui_0087 0.15 -2.6
85,734 - Dsui_0087 0.22 -2.5
85,743 - Dsui_0087 0.23 -2.7
85,788 + Dsui_0087 0.26 +0.1
85,796 - Dsui_0087 0.26 -2.1
85,826 - Dsui_0087 0.28 -2.5
85,826 - Dsui_0087 0.28 -2.2
85,833 + Dsui_0087 0.29 -3.5
85,833 + Dsui_0087 0.29 -2.4
85,836 - Dsui_0087 0.29 -4.3
85,841 - Dsui_0087 0.29 -3.0
85,861 + Dsui_0087 0.31 +0.8
85,903 - Dsui_0087 0.34 -2.3
86,184 + Dsui_0087 0.53 -1.4
86,218 + Dsui_0087 0.56 -2.5
86,284 + Dsui_0087 0.60 -2.1
86,292 - Dsui_0087 0.61 -3.1
86,394 - Dsui_0087 0.68 -3.4

Or see this region's nucleotide sequence