Strain Fitness in Dechlorosoma suillum PS around Dsui_0080

Experiment: Anaero. lactate (C), perchlorate electron acceptor

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_0079 and Dsui_0080 are separated by 515 nucleotidesDsui_0080 and Dsui_0081 overlap by 40 nucleotidesDsui_0081 and Dsui_0082 are separated by 52 nucleotides Dsui_0079: Dsui_0079 - pseudaminic acid synthase, at 75,671 to 76,726 _0079 Dsui_0080: Dsui_0080 - pseudaminic acid biosynthesis-associated protein PseG, at 77,242 to 78,381 _0080 Dsui_0081: Dsui_0081 - pseudaminic acid CMP-transferase, at 78,342 to 79,040 _0081 Dsui_0082: Dsui_0082 - UDP-4-keto-6-deoxy-N-acetylglucosamine 4-aminotransferase, at 79,093 to 80,253 _0082 Position (kb) 77 78 79Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 76.386 kb on + strand, within Dsui_0079at 76.427 kb on - strand, within Dsui_0079at 76.427 kb on - strand, within Dsui_0079at 76.479 kb on - strand, within Dsui_0079at 76.479 kb on - strand, within Dsui_0079at 76.511 kb on + strand, within Dsui_0079at 76.544 kb on + strand, within Dsui_0079at 76.545 kb on - strand, within Dsui_0079at 76.545 kb on - strand, within Dsui_0079at 76.554 kb on - strand, within Dsui_0079at 76.581 kb on + strand, within Dsui_0079at 76.589 kb on - strand, within Dsui_0079at 76.597 kb on - strand, within Dsui_0079at 76.608 kb on - strand, within Dsui_0079at 76.644 kb on + strandat 76.670 kb on - strandat 76.684 kb on - strandat 76.727 kb on + strandat 76.735 kb on - strandat 76.735 kb on - strandat 76.735 kb on - strandat 76.739 kb on + strandat 76.744 kb on + strandat 76.750 kb on + strandat 76.755 kb on + strandat 76.758 kb on - strandat 76.763 kb on - strandat 76.763 kb on - strandat 76.763 kb on - strandat 76.777 kb on - strandat 76.902 kb on - strandat 77.267 kb on - strandat 77.324 kb on + strandat 77.324 kb on + strandat 77.324 kb on + strandat 77.324 kb on + strandat 77.332 kb on - strandat 77.334 kb on + strandat 77.417 kb on - strand, within Dsui_0080at 77.506 kb on + strand, within Dsui_0080at 77.523 kb on + strand, within Dsui_0080at 77.549 kb on - strand, within Dsui_0080at 77.555 kb on + strand, within Dsui_0080at 77.563 kb on - strand, within Dsui_0080at 77.563 kb on - strand, within Dsui_0080at 77.572 kb on - strand, within Dsui_0080at 77.580 kb on + strand, within Dsui_0080at 77.580 kb on + strand, within Dsui_0080at 77.580 kb on + strand, within Dsui_0080at 77.580 kb on + strand, within Dsui_0080at 77.588 kb on - strand, within Dsui_0080at 77.611 kb on - strand, within Dsui_0080at 77.693 kb on + strand, within Dsui_0080at 77.701 kb on - strand, within Dsui_0080at 77.708 kb on + strand, within Dsui_0080at 77.716 kb on - strand, within Dsui_0080at 77.719 kb on + strand, within Dsui_0080at 77.818 kb on + strand, within Dsui_0080at 77.826 kb on - strand, within Dsui_0080at 77.826 kb on - strand, within Dsui_0080at 77.854 kb on + strand, within Dsui_0080at 77.873 kb on + strand, within Dsui_0080at 77.876 kb on - strand, within Dsui_0080at 77.926 kb on - strand, within Dsui_0080at 77.926 kb on - strand, within Dsui_0080at 78.000 kb on + strand, within Dsui_0080at 78.001 kb on + strand, within Dsui_0080at 78.038 kb on + strand, within Dsui_0080at 78.062 kb on - strand, within Dsui_0080at 78.069 kb on - strand, within Dsui_0080at 78.069 kb on - strand, within Dsui_0080at 78.124 kb on + strand, within Dsui_0080at 78.132 kb on - strand, within Dsui_0080at 78.246 kb on - strand, within Dsui_0080at 78.257 kb on + strand, within Dsui_0080at 78.267 kb on + strand, within Dsui_0080at 78.267 kb on + strand, within Dsui_0080at 78.275 kb on - strandat 78.288 kb on + strandat 78.288 kb on + strandat 78.308 kb on - strandat 78.346 kb on - strandat 78.349 kb on + strandat 78.349 kb on + strandat 78.378 kb on - strandat 78.390 kb on + strandat 78.396 kb on + strandat 78.406 kb on + strandat 78.415 kb on - strand, within Dsui_0081at 78.482 kb on + strand, within Dsui_0081at 78.487 kb on + strand, within Dsui_0081at 78.547 kb on - strand, within Dsui_0081at 78.584 kb on - strand, within Dsui_0081at 78.586 kb on - strand, within Dsui_0081at 78.608 kb on - strand, within Dsui_0081at 78.633 kb on + strand, within Dsui_0081at 78.641 kb on - strand, within Dsui_0081at 78.649 kb on + strand, within Dsui_0081at 78.664 kb on + strand, within Dsui_0081at 78.664 kb on + strand, within Dsui_0081at 78.666 kb on + strand, within Dsui_0081at 78.666 kb on + strand, within Dsui_0081at 78.666 kb on + strand, within Dsui_0081at 78.666 kb on + strand, within Dsui_0081at 78.667 kb on - strand, within Dsui_0081at 78.706 kb on + strand, within Dsui_0081at 78.719 kb on - strand, within Dsui_0081at 78.757 kb on + strand, within Dsui_0081at 78.779 kb on - strand, within Dsui_0081at 78.856 kb on + strand, within Dsui_0081at 78.856 kb on + strand, within Dsui_0081at 78.856 kb on + strand, within Dsui_0081at 78.856 kb on + strand, within Dsui_0081at 78.856 kb on + strand, within Dsui_0081at 78.856 kb on + strand, within Dsui_0081at 78.856 kb on + strand, within Dsui_0081at 78.856 kb on + strand, within Dsui_0081at 78.856 kb on + strand, within Dsui_0081at 78.856 kb on + strand, within Dsui_0081at 78.856 kb on + strand, within Dsui_0081at 78.856 kb on + strand, within Dsui_0081at 78.856 kb on + strand, within Dsui_0081at 78.856 kb on + strand, within Dsui_0081at 78.856 kb on + strand, within Dsui_0081at 78.856 kb on + strand, within Dsui_0081at 78.856 kb on - strand, within Dsui_0081at 78.864 kb on - strand, within Dsui_0081at 78.864 kb on - strand, within Dsui_0081at 78.864 kb on - strand, within Dsui_0081at 78.864 kb on - strand, within Dsui_0081at 78.864 kb on - strand, within Dsui_0081at 78.864 kb on - strand, within Dsui_0081at 78.864 kb on - strand, within Dsui_0081at 78.927 kb on + strand, within Dsui_0081at 78.976 kb on + strandat 78.995 kb on + strandat 79.111 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaero. lactate (C), perchlorate electron acceptor
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76,386 + Dsui_0079 0.68 -1.4
76,427 - Dsui_0079 0.72 -0.9
76,427 - Dsui_0079 0.72 -1.4
76,479 - Dsui_0079 0.77 -1.2
76,479 - Dsui_0079 0.77 -1.1
76,511 + Dsui_0079 0.80 -1.4
76,544 + Dsui_0079 0.83 -1.4
76,545 - Dsui_0079 0.83 -1.7
76,545 - Dsui_0079 0.83 -1.5
76,554 - Dsui_0079 0.84 -1.6
76,581 + Dsui_0079 0.86 -1.7
76,589 - Dsui_0079 0.87 -1.7
76,597 - Dsui_0079 0.88 -1.6
76,608 - Dsui_0079 0.89 -1.3
76,644 + -1.6
76,670 - -1.4
76,684 - -1.4
76,727 + +0.1
76,735 - +0.3
76,735 - -0.3
76,735 - +0.0
76,739 + +0.5
76,744 + -2.6
76,750 + -0.1
76,755 + -0.4
76,758 - +0.3
76,763 - -4.8
76,763 - -3.8
76,763 - -4.0
76,777 - -1.9
76,902 - -1.4
77,267 - -0.1
77,324 + -1.2
77,324 + -1.5
77,324 + -1.2
77,324 + -1.8
77,332 - -2.0
77,334 + -1.5
77,417 - Dsui_0080 0.15 -1.1
77,506 + Dsui_0080 0.23 -1.0
77,523 + Dsui_0080 0.25 -1.6
77,549 - Dsui_0080 0.27 -1.1
77,555 + Dsui_0080 0.27 -1.2
77,563 - Dsui_0080 0.28 -1.4
77,563 - Dsui_0080 0.28 -1.2
77,572 - Dsui_0080 0.29 -1.0
77,580 + Dsui_0080 0.30 -0.1
77,580 + Dsui_0080 0.30 -1.7
77,580 + Dsui_0080 0.30 -0.7
77,580 + Dsui_0080 0.30 -1.4
77,588 - Dsui_0080 0.30 -1.6
77,611 - Dsui_0080 0.32 -1.6
77,693 + Dsui_0080 0.40 -2.4
77,701 - Dsui_0080 0.40 -1.5
77,708 + Dsui_0080 0.41 -0.6
77,716 - Dsui_0080 0.42 -1.3
77,719 + Dsui_0080 0.42 -1.1
77,818 + Dsui_0080 0.51 -1.0
77,826 - Dsui_0080 0.51 -1.2
77,826 - Dsui_0080 0.51 -1.0
77,854 + Dsui_0080 0.54 -1.3
77,873 + Dsui_0080 0.55 -1.3
77,876 - Dsui_0080 0.56 -1.5
77,926 - Dsui_0080 0.60 -1.3
77,926 - Dsui_0080 0.60 -0.9
78,000 + Dsui_0080 0.66 -1.4
78,001 + Dsui_0080 0.67 -1.2
78,038 + Dsui_0080 0.70 -1.2
78,062 - Dsui_0080 0.72 -1.3
78,069 - Dsui_0080 0.73 -2.4
78,069 - Dsui_0080 0.73 -1.0
78,124 + Dsui_0080 0.77 -1.1
78,132 - Dsui_0080 0.78 -1.4
78,246 - Dsui_0080 0.88 -1.0
78,257 + Dsui_0080 0.89 -0.8
78,267 + Dsui_0080 0.90 -1.2
78,267 + Dsui_0080 0.90 -2.1
78,275 - -1.5
78,288 + -1.5
78,288 + +0.1
78,308 - -1.3
78,346 - +0.3
78,349 + +0.3
78,349 + +0.0
78,378 - +0.1
78,390 + -0.5
78,396 + -0.7
78,406 + -0.8
78,415 - Dsui_0081 0.10 -1.1
78,482 + Dsui_0081 0.20 -0.9
78,487 + Dsui_0081 0.21 -0.8
78,547 - Dsui_0081 0.29 -0.6
78,584 - Dsui_0081 0.35 -0.9
78,586 - Dsui_0081 0.35 -1.2
78,608 - Dsui_0081 0.38 -1.0
78,633 + Dsui_0081 0.42 -1.2
78,641 - Dsui_0081 0.43 -2.2
78,649 + Dsui_0081 0.44 -2.4
78,664 + Dsui_0081 0.46 -0.9
78,664 + Dsui_0081 0.46 +0.2
78,666 + Dsui_0081 0.46 -1.0
78,666 + Dsui_0081 0.46 -1.6
78,666 + Dsui_0081 0.46 -0.8
78,666 + Dsui_0081 0.46 -2.1
78,667 - Dsui_0081 0.46 -1.2
78,706 + Dsui_0081 0.52 -0.5
78,719 - Dsui_0081 0.54 -1.1
78,757 + Dsui_0081 0.59 -2.0
78,779 - Dsui_0081 0.63 -1.0
78,856 + Dsui_0081 0.74 -2.1
78,856 + Dsui_0081 0.74 -1.1
78,856 + Dsui_0081 0.74 -0.4
78,856 + Dsui_0081 0.74 -1.7
78,856 + Dsui_0081 0.74 -1.1
78,856 + Dsui_0081 0.74 -0.7
78,856 + Dsui_0081 0.74 -1.1
78,856 + Dsui_0081 0.74 -0.4
78,856 + Dsui_0081 0.74 -0.9
78,856 + Dsui_0081 0.74 -1.4
78,856 + Dsui_0081 0.74 -2.2
78,856 + Dsui_0081 0.74 -1.2
78,856 + Dsui_0081 0.74 -1.4
78,856 + Dsui_0081 0.74 -1.2
78,856 + Dsui_0081 0.74 -2.0
78,856 + Dsui_0081 0.74 +0.1
78,856 - Dsui_0081 0.74 -1.0
78,864 - Dsui_0081 0.75 -0.8
78,864 - Dsui_0081 0.75 -1.3
78,864 - Dsui_0081 0.75 -1.0
78,864 - Dsui_0081 0.75 -1.3
78,864 - Dsui_0081 0.75 -0.9
78,864 - Dsui_0081 0.75 -1.0
78,864 - Dsui_0081 0.75 -1.2
78,927 + Dsui_0081 0.84 -1.2
78,976 + -0.5
78,995 + -0.9
79,111 + -0.6

Or see this region's nucleotide sequence