Strain Fitness in Dechlorosoma suillum PS around Dsui_0078

Experiment: Anaero. lactate (C), perchlorate electron acceptor

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_0077 and Dsui_0078 overlap by 4 nucleotidesDsui_0078 and Dsui_0079 are separated by 50 nucleotides Dsui_0077: Dsui_0077 - putative PLP-dependent enzyme possibly involved in cell wall biogenesis, at 73,351 to 74,643 _0077 Dsui_0078: Dsui_0078 - putative dehydrogenase, at 74,640 to 75,620 _0078 Dsui_0079: Dsui_0079 - pseudaminic acid synthase, at 75,671 to 76,726 _0079 Position (kb) 74 75 76Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 73.642 kb on - strand, within Dsui_0077at 73.674 kb on + strand, within Dsui_0077at 73.681 kb on + strand, within Dsui_0077at 73.689 kb on - strand, within Dsui_0077at 73.689 kb on - strand, within Dsui_0077at 73.689 kb on - strand, within Dsui_0077at 73.689 kb on - strand, within Dsui_0077at 73.697 kb on - strand, within Dsui_0077at 73.710 kb on + strand, within Dsui_0077at 73.731 kb on + strand, within Dsui_0077at 73.739 kb on - strand, within Dsui_0077at 73.739 kb on - strand, within Dsui_0077at 73.739 kb on - strand, within Dsui_0077at 73.798 kb on + strand, within Dsui_0077at 73.812 kb on + strand, within Dsui_0077at 73.812 kb on + strand, within Dsui_0077at 73.830 kb on + strand, within Dsui_0077at 73.840 kb on - strand, within Dsui_0077at 73.844 kb on - strand, within Dsui_0077at 73.878 kb on - strand, within Dsui_0077at 73.901 kb on - strand, within Dsui_0077at 73.915 kb on + strand, within Dsui_0077at 73.944 kb on + strand, within Dsui_0077at 73.990 kb on + strand, within Dsui_0077at 74.000 kb on + strand, within Dsui_0077at 74.006 kb on + strand, within Dsui_0077at 74.008 kb on - strand, within Dsui_0077at 74.008 kb on - strand, within Dsui_0077at 74.019 kb on + strand, within Dsui_0077at 74.033 kb on - strand, within Dsui_0077at 74.057 kb on - strand, within Dsui_0077at 74.086 kb on + strand, within Dsui_0077at 74.094 kb on - strand, within Dsui_0077at 74.110 kb on - strand, within Dsui_0077at 74.128 kb on + strand, within Dsui_0077at 74.136 kb on - strand, within Dsui_0077at 74.140 kb on - strand, within Dsui_0077at 74.188 kb on - strand, within Dsui_0077at 74.189 kb on + strand, within Dsui_0077at 74.194 kb on + strand, within Dsui_0077at 74.194 kb on + strand, within Dsui_0077at 74.197 kb on - strand, within Dsui_0077at 74.202 kb on - strand, within Dsui_0077at 74.206 kb on + strand, within Dsui_0077at 74.222 kb on + strand, within Dsui_0077at 74.229 kb on + strand, within Dsui_0077at 74.242 kb on + strand, within Dsui_0077at 74.243 kb on - strand, within Dsui_0077at 74.274 kb on + strand, within Dsui_0077at 74.284 kb on + strand, within Dsui_0077at 74.284 kb on - strand, within Dsui_0077at 74.294 kb on + strand, within Dsui_0077at 74.297 kb on - strand, within Dsui_0077at 74.301 kb on + strand, within Dsui_0077at 74.369 kb on - strand, within Dsui_0077at 74.418 kb on + strand, within Dsui_0077at 74.435 kb on + strand, within Dsui_0077at 74.457 kb on + strand, within Dsui_0077at 74.465 kb on - strand, within Dsui_0077at 74.465 kb on - strand, within Dsui_0077at 74.476 kb on + strand, within Dsui_0077at 74.486 kb on - strand, within Dsui_0077at 74.523 kb on + strandat 74.531 kb on - strandat 74.536 kb on - strandat 74.578 kb on + strandat 74.616 kb on + strandat 74.624 kb on - strandat 74.624 kb on - strandat 74.661 kb on + strandat 74.667 kb on - strandat 74.669 kb on + strandat 74.669 kb on + strandat 74.680 kb on + strandat 74.688 kb on - strandat 74.719 kb on - strandat 74.721 kb on + strandat 74.739 kb on - strand, within Dsui_0078at 74.799 kb on + strand, within Dsui_0078at 74.799 kb on + strand, within Dsui_0078at 74.799 kb on + strand, within Dsui_0078at 74.799 kb on + strand, within Dsui_0078at 74.799 kb on + strand, within Dsui_0078at 74.799 kb on + strand, within Dsui_0078at 74.799 kb on + strand, within Dsui_0078at 74.807 kb on + strand, within Dsui_0078at 74.807 kb on - strand, within Dsui_0078at 74.807 kb on - strand, within Dsui_0078at 74.870 kb on - strand, within Dsui_0078at 74.903 kb on + strand, within Dsui_0078at 74.903 kb on + strand, within Dsui_0078at 74.916 kb on - strand, within Dsui_0078at 74.916 kb on - strand, within Dsui_0078at 74.920 kb on + strand, within Dsui_0078at 74.928 kb on - strand, within Dsui_0078at 74.930 kb on + strand, within Dsui_0078at 74.978 kb on - strand, within Dsui_0078at 75.012 kb on + strand, within Dsui_0078at 75.019 kb on + strand, within Dsui_0078at 75.049 kb on + strand, within Dsui_0078at 75.082 kb on + strand, within Dsui_0078at 75.082 kb on + strand, within Dsui_0078at 75.082 kb on + strand, within Dsui_0078at 75.090 kb on - strand, within Dsui_0078at 75.090 kb on - strand, within Dsui_0078at 75.090 kb on - strand, within Dsui_0078at 75.118 kb on + strand, within Dsui_0078at 75.126 kb on - strand, within Dsui_0078at 75.126 kb on - strand, within Dsui_0078at 75.126 kb on - strand, within Dsui_0078at 75.126 kb on - strand, within Dsui_0078at 75.164 kb on + strand, within Dsui_0078at 75.164 kb on + strand, within Dsui_0078at 75.232 kb on - strand, within Dsui_0078at 75.251 kb on - strand, within Dsui_0078at 75.309 kb on + strand, within Dsui_0078at 75.360 kb on + strand, within Dsui_0078at 75.401 kb on + strand, within Dsui_0078at 75.464 kb on - strand, within Dsui_0078at 75.538 kb on - strandat 75.557 kb on - strandat 75.573 kb on - strandat 75.599 kb on - strandat 75.630 kb on + strandat 75.635 kb on + strandat 75.646 kb on + strandat 75.646 kb on + strandat 75.673 kb on + strandat 75.687 kb on + strandat 75.692 kb on + strandat 75.731 kb on + strandat 75.743 kb on + strandat 75.749 kb on - strandat 75.760 kb on - strandat 75.853 kb on + strand, within Dsui_0079at 75.907 kb on - strand, within Dsui_0079at 75.907 kb on - strand, within Dsui_0079at 75.927 kb on + strandat 75.935 kb on - strand, within Dsui_0079at 75.935 kb on - strand, within Dsui_0079at 75.935 kb on - strand, within Dsui_0079at 75.994 kb on + strand, within Dsui_0079at 75.999 kb on + strand, within Dsui_0079at 76.051 kb on - strand, within Dsui_0079at 76.064 kb on - strand, within Dsui_0079at 76.083 kb on + strand, within Dsui_0079at 76.129 kb on + strand, within Dsui_0079at 76.138 kb on - strand, within Dsui_0079at 76.155 kb on - strand, within Dsui_0079at 76.386 kb on + strand, within Dsui_0079at 76.427 kb on - strand, within Dsui_0079at 76.427 kb on - strand, within Dsui_0079at 76.479 kb on - strand, within Dsui_0079at 76.479 kb on - strand, within Dsui_0079at 76.511 kb on + strand, within Dsui_0079at 76.544 kb on + strand, within Dsui_0079at 76.545 kb on - strand, within Dsui_0079at 76.545 kb on - strand, within Dsui_0079at 76.554 kb on - strand, within Dsui_0079at 76.581 kb on + strand, within Dsui_0079at 76.589 kb on - strand, within Dsui_0079at 76.597 kb on - strand, within Dsui_0079at 76.608 kb on - strand, within Dsui_0079

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaero. lactate (C), perchlorate electron acceptor
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73,642 - Dsui_0077 0.23 -1.3
73,674 + Dsui_0077 0.25 -1.3
73,681 + Dsui_0077 0.26 -2.0
73,689 - Dsui_0077 0.26 -0.4
73,689 - Dsui_0077 0.26 -1.2
73,689 - Dsui_0077 0.26 -1.1
73,689 - Dsui_0077 0.26 -1.6
73,697 - Dsui_0077 0.27 -1.1
73,710 + Dsui_0077 0.28 -1.1
73,731 + Dsui_0077 0.29 -1.1
73,739 - Dsui_0077 0.30 -1.5
73,739 - Dsui_0077 0.30 -1.7
73,739 - Dsui_0077 0.30 -1.1
73,798 + Dsui_0077 0.35 -1.0
73,812 + Dsui_0077 0.36 -0.9
73,812 + Dsui_0077 0.36 -1.3
73,830 + Dsui_0077 0.37 -1.2
73,840 - Dsui_0077 0.38 -0.6
73,844 - Dsui_0077 0.38 -1.3
73,878 - Dsui_0077 0.41 -1.9
73,901 - Dsui_0077 0.43 -0.6
73,915 + Dsui_0077 0.44 -1.4
73,944 + Dsui_0077 0.46 -1.6
73,990 + Dsui_0077 0.49 -0.7
74,000 + Dsui_0077 0.50 -1.0
74,006 + Dsui_0077 0.51 -1.6
74,008 - Dsui_0077 0.51 -1.1
74,008 - Dsui_0077 0.51 -1.1
74,019 + Dsui_0077 0.52 -1.4
74,033 - Dsui_0077 0.53 -1.2
74,057 - Dsui_0077 0.55 -1.0
74,086 + Dsui_0077 0.57 -0.7
74,094 - Dsui_0077 0.57 -1.2
74,110 - Dsui_0077 0.59 -1.3
74,128 + Dsui_0077 0.60 -1.1
74,136 - Dsui_0077 0.61 -0.8
74,140 - Dsui_0077 0.61 -1.7
74,188 - Dsui_0077 0.65 -1.2
74,189 + Dsui_0077 0.65 -2.4
74,194 + Dsui_0077 0.65 -1.2
74,194 + Dsui_0077 0.65 -1.0
74,197 - Dsui_0077 0.65 -1.4
74,202 - Dsui_0077 0.66 -0.7
74,206 + Dsui_0077 0.66 -1.3
74,222 + Dsui_0077 0.67 -1.0
74,229 + Dsui_0077 0.68 -0.7
74,242 + Dsui_0077 0.69 -0.5
74,243 - Dsui_0077 0.69 -1.9
74,274 + Dsui_0077 0.71 -0.8
74,284 + Dsui_0077 0.72 -1.1
74,284 - Dsui_0077 0.72 -1.2
74,294 + Dsui_0077 0.73 -0.7
74,297 - Dsui_0077 0.73 -1.3
74,301 + Dsui_0077 0.73 -1.4
74,369 - Dsui_0077 0.79 -0.9
74,418 + Dsui_0077 0.83 -3.8
74,435 + Dsui_0077 0.84 -0.9
74,457 + Dsui_0077 0.86 -0.9
74,465 - Dsui_0077 0.86 -1.0
74,465 - Dsui_0077 0.86 -1.3
74,476 + Dsui_0077 0.87 -1.2
74,486 - Dsui_0077 0.88 -1.2
74,523 + -1.0
74,531 - -0.9
74,536 - -0.8
74,578 + -1.2
74,616 + -0.9
74,624 - -1.1
74,624 - -1.2
74,661 + +0.4
74,667 - +0.7
74,669 + -0.2
74,669 + -0.6
74,680 + -0.5
74,688 - -0.5
74,719 - -0.5
74,721 + -0.2
74,739 - Dsui_0078 0.10 -0.3
74,799 + Dsui_0078 0.16 -0.4
74,799 + Dsui_0078 0.16 +0.7
74,799 + Dsui_0078 0.16 -0.2
74,799 + Dsui_0078 0.16 -1.1
74,799 + Dsui_0078 0.16 -0.4
74,799 + Dsui_0078 0.16 +0.1
74,799 + Dsui_0078 0.16 +0.0
74,807 + Dsui_0078 0.17 -0.3
74,807 - Dsui_0078 0.17 -0.2
74,807 - Dsui_0078 0.17 -0.3
74,870 - Dsui_0078 0.23 -0.2
74,903 + Dsui_0078 0.27 -0.5
74,903 + Dsui_0078 0.27 -0.4
74,916 - Dsui_0078 0.28 -0.9
74,916 - Dsui_0078 0.28 -0.3
74,920 + Dsui_0078 0.29 -1.1
74,928 - Dsui_0078 0.29 -0.5
74,930 + Dsui_0078 0.30 +1.1
74,978 - Dsui_0078 0.34 -0.2
75,012 + Dsui_0078 0.38 -0.2
75,019 + Dsui_0078 0.39 -0.3
75,049 + Dsui_0078 0.42 -0.8
75,082 + Dsui_0078 0.45 -0.6
75,082 + Dsui_0078 0.45 -0.5
75,082 + Dsui_0078 0.45 -0.2
75,090 - Dsui_0078 0.46 +0.1
75,090 - Dsui_0078 0.46 -0.1
75,090 - Dsui_0078 0.46 -0.4
75,118 + Dsui_0078 0.49 +0.1
75,126 - Dsui_0078 0.50 +0.1
75,126 - Dsui_0078 0.50 +0.2
75,126 - Dsui_0078 0.50 -0.1
75,126 - Dsui_0078 0.50 -0.1
75,164 + Dsui_0078 0.53 -1.7
75,164 + Dsui_0078 0.53 +0.5
75,232 - Dsui_0078 0.60 -0.2
75,251 - Dsui_0078 0.62 -0.1
75,309 + Dsui_0078 0.68 -0.1
75,360 + Dsui_0078 0.73 +0.8
75,401 + Dsui_0078 0.78 +0.2
75,464 - Dsui_0078 0.84 -0.3
75,538 - +0.0
75,557 - +0.5
75,573 - -0.2
75,599 - +0.6
75,630 + -0.0
75,635 + +0.8
75,646 + -0.3
75,646 + +0.3
75,673 + +0.5
75,687 + -1.6
75,692 + -1.6
75,731 + -1.2
75,743 + -2.1
75,749 - -1.2
75,760 - -1.4
75,853 + Dsui_0079 0.17 -1.5
75,907 - Dsui_0079 0.22 -1.1
75,907 - Dsui_0079 0.22 -2.0
75,927 + -0.2
75,935 - Dsui_0079 0.25 -1.5
75,935 - Dsui_0079 0.25 -1.1
75,935 - Dsui_0079 0.25 -1.8
75,994 + Dsui_0079 0.31 -1.5
75,999 + Dsui_0079 0.31 -1.5
76,051 - Dsui_0079 0.36 -1.6
76,064 - Dsui_0079 0.37 -1.6
76,083 + Dsui_0079 0.39 -1.6
76,129 + Dsui_0079 0.43 -1.3
76,138 - Dsui_0079 0.44 -1.3
76,155 - Dsui_0079 0.46 -1.6
76,386 + Dsui_0079 0.68 -1.4
76,427 - Dsui_0079 0.72 -0.9
76,427 - Dsui_0079 0.72 -1.4
76,479 - Dsui_0079 0.77 -1.2
76,479 - Dsui_0079 0.77 -1.1
76,511 + Dsui_0079 0.80 -1.4
76,544 + Dsui_0079 0.83 -1.4
76,545 - Dsui_0079 0.83 -1.7
76,545 - Dsui_0079 0.83 -1.5
76,554 - Dsui_0079 0.84 -1.6
76,581 + Dsui_0079 0.86 -1.7
76,589 - Dsui_0079 0.87 -1.7
76,597 - Dsui_0079 0.88 -1.6
76,608 - Dsui_0079 0.89 -1.3

Or see this region's nucleotide sequence