Experiment: m.b. Dimethyl Sulfoxide 7.5 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_644 and HP15_645 are separated by 355 nucleotides HP15_645 and HP15_646 are separated by 232 nucleotides HP15_646 and HP15_647 are separated by 153 nucleotides
HP15_644: HP15_644 - conserved hypothetical protein, secreted, at 667,399 to 668,142
_644
HP15_645: HP15_645 - conserved hypothetical protein, at 668,498 to 669,187
_645
HP15_646: HP15_646 - hypothetical protein, at 669,420 to 669,770
_646
HP15_647: HP15_647 - conserved hypothetical protein, secreted, at 669,924 to 670,652
_647
Position (kb) 668
669
670 Strain fitness (log2 ratio) -1
0
1
2 at 667.710 kb on + strand, within HP15_644 at 667.761 kb on - strand, within HP15_644 at 667.761 kb on - strand, within HP15_644 at 667.768 kb on + strand, within HP15_644 at 667.793 kb on + strand, within HP15_644 at 667.844 kb on + strand, within HP15_644 at 667.880 kb on - strand, within HP15_644 at 667.973 kb on - strand, within HP15_644 at 667.999 kb on - strand, within HP15_644 at 668.021 kb on + strand, within HP15_644 at 668.021 kb on + strand, within HP15_644 at 668.028 kb on + strand, within HP15_644 at 668.028 kb on + strand, within HP15_644 at 668.028 kb on + strand, within HP15_644 at 668.029 kb on - strand, within HP15_644 at 668.029 kb on - strand, within HP15_644 at 668.029 kb on - strand, within HP15_644 at 668.029 kb on - strand, within HP15_644 at 668.029 kb on - strand, within HP15_644 at 668.249 kb on + strand at 668.249 kb on + strand at 668.283 kb on + strand at 668.462 kb on - strand at 668.565 kb on + strand at 668.565 kb on + strand at 668.573 kb on - strand, within HP15_645 at 668.679 kb on + strand, within HP15_645 at 668.684 kb on + strand, within HP15_645 at 668.694 kb on + strand, within HP15_645 at 668.724 kb on - strand, within HP15_645 at 668.767 kb on - strand, within HP15_645 at 668.767 kb on - strand, within HP15_645 at 668.767 kb on - strand, within HP15_645 at 668.767 kb on - strand, within HP15_645 at 668.860 kb on - strand, within HP15_645 at 668.860 kb on - strand, within HP15_645 at 669.023 kb on + strand, within HP15_645 at 669.278 kb on + strand at 669.278 kb on + strand at 669.286 kb on + strand at 669.286 kb on - strand at 669.329 kb on + strand at 669.364 kb on + strand at 669.427 kb on + strand at 669.483 kb on + strand, within HP15_646 at 669.483 kb on + strand, within HP15_646 at 669.491 kb on - strand, within HP15_646 at 669.564 kb on - strand, within HP15_646 at 669.705 kb on - strand, within HP15_646 at 669.737 kb on + strand at 669.798 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Dimethyl Sulfoxide 7.5 vol% remove 667,710 + HP15_644 0.42 -0.8 667,761 - HP15_644 0.49 +1.6 667,761 - HP15_644 0.49 -0.7 667,768 + HP15_644 0.50 -0.5 667,793 + HP15_644 0.53 +2.6 667,844 + HP15_644 0.60 -0.4 667,880 - HP15_644 0.65 +0.5 667,973 - HP15_644 0.77 -0.4 667,999 - HP15_644 0.81 +0.1 668,021 + HP15_644 0.84 +0.1 668,021 + HP15_644 0.84 -0.9 668,028 + HP15_644 0.85 -0.8 668,028 + HP15_644 0.85 -0.7 668,028 + HP15_644 0.85 +0.3 668,029 - HP15_644 0.85 +0.1 668,029 - HP15_644 0.85 +0.2 668,029 - HP15_644 0.85 -0.5 668,029 - HP15_644 0.85 +1.1 668,029 - HP15_644 0.85 -0.5 668,249 + -0.2 668,249 + -1.4 668,283 + -0.3 668,462 - -0.0 668,565 + +0.2 668,565 + -0.7 668,573 - HP15_645 0.11 -0.7 668,679 + HP15_645 0.26 +0.0 668,684 + HP15_645 0.27 -0.2 668,694 + HP15_645 0.28 -1.5 668,724 - HP15_645 0.33 -0.8 668,767 - HP15_645 0.39 -0.6 668,767 - HP15_645 0.39 -0.2 668,767 - HP15_645 0.39 -0.1 668,767 - HP15_645 0.39 +0.3 668,860 - HP15_645 0.52 -0.2 668,860 - HP15_645 0.52 +0.9 669,023 + HP15_645 0.76 +0.3 669,278 + -0.5 669,278 + -0.3 669,286 + +0.0 669,286 - -0.1 669,329 + +0.4 669,364 + -0.6 669,427 + -0.0 669,483 + HP15_646 0.18 +1.6 669,483 + HP15_646 0.18 -0.0 669,491 - HP15_646 0.20 -0.3 669,564 - HP15_646 0.41 -0.5 669,705 - HP15_646 0.81 -1.4 669,737 + -0.3 669,798 + +0.0
Or see this region's nucleotide sequence