Strain Fitness in Marinobacter adhaerens HP15 around HP15_4143

Experiment: m.b. Dimethyl Sulfoxide 7.5 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_4141 and HP15_4142 are separated by 24 nucleotidesHP15_4142 and HP15_4143 are separated by 32 nucleotidesHP15_4143 and HP15_4144 are separated by 5 nucleotides HP15_4141: HP15_4141 - acyl-CoA dehydrogenase domain protein, at 4,374,476 to 4,375,615 _4141 HP15_4142: HP15_4142 - naphthoate synthase, at 4,375,640 to 4,376,422 _4142 HP15_4143: HP15_4143 - 3-oxoacyl-(acyl-carrier-protein) reductase, at 4,376,455 to 4,377,252 _4143 HP15_4144: HP15_4144 - short chain acyl-CoA synthetase, at 4,377,258 to 4,378,994 _4144 Position (kb) 4376 4377 4378Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4375.565 kb on + strandat 4375.565 kb on + strandat 4375.573 kb on - strandat 4375.698 kb on + strandat 4375.726 kb on + strand, within HP15_4142at 4375.854 kb on + strand, within HP15_4142at 4375.884 kb on + strand, within HP15_4142at 4375.892 kb on - strand, within HP15_4142at 4375.901 kb on + strand, within HP15_4142at 4376.068 kb on - strand, within HP15_4142at 4376.131 kb on + strand, within HP15_4142at 4376.185 kb on + strand, within HP15_4142at 4376.185 kb on + strand, within HP15_4142at 4376.185 kb on + strand, within HP15_4142at 4376.185 kb on + strand, within HP15_4142at 4376.185 kb on + strand, within HP15_4142at 4376.193 kb on - strand, within HP15_4142at 4376.193 kb on - strand, within HP15_4142at 4376.198 kb on + strand, within HP15_4142at 4376.307 kb on - strand, within HP15_4142at 4376.317 kb on + strand, within HP15_4142at 4376.322 kb on + strand, within HP15_4142at 4376.327 kb on + strand, within HP15_4142at 4376.340 kb on - strand, within HP15_4142at 4376.351 kb on - strandat 4376.426 kb on - strandat 4376.439 kb on - strandat 4376.491 kb on + strandat 4376.494 kb on - strandat 4376.541 kb on + strand, within HP15_4143at 4376.546 kb on + strand, within HP15_4143at 4376.554 kb on - strand, within HP15_4143at 4376.605 kb on - strand, within HP15_4143at 4376.647 kb on - strand, within HP15_4143at 4376.647 kb on - strand, within HP15_4143at 4376.652 kb on - strand, within HP15_4143at 4376.664 kb on + strand, within HP15_4143at 4376.672 kb on - strand, within HP15_4143at 4376.674 kb on + strand, within HP15_4143at 4376.728 kb on - strand, within HP15_4143at 4376.733 kb on - strand, within HP15_4143at 4376.747 kb on - strand, within HP15_4143at 4376.782 kb on + strand, within HP15_4143at 4376.782 kb on + strand, within HP15_4143at 4376.812 kb on - strand, within HP15_4143at 4376.837 kb on - strand, within HP15_4143at 4376.918 kb on + strand, within HP15_4143at 4376.918 kb on + strand, within HP15_4143at 4376.926 kb on - strand, within HP15_4143at 4377.086 kb on - strand, within HP15_4143at 4377.088 kb on + strand, within HP15_4143at 4377.091 kb on - strand, within HP15_4143at 4377.096 kb on - strand, within HP15_4143at 4377.112 kb on + strand, within HP15_4143at 4377.120 kb on - strand, within HP15_4143at 4377.256 kb on + strandat 4377.256 kb on + strandat 4377.256 kb on + strandat 4377.264 kb on - strandat 4377.275 kb on + strandat 4377.289 kb on + strandat 4377.297 kb on - strandat 4377.297 kb on - strandat 4377.381 kb on - strandat 4377.412 kb on + strandat 4377.412 kb on + strandat 4377.412 kb on + strandat 4377.415 kb on - strandat 4377.420 kb on - strandat 4377.420 kb on - strandat 4377.420 kb on - strandat 4377.420 kb on - strandat 4377.420 kb on - strandat 4377.422 kb on + strandat 4377.422 kb on + strandat 4377.430 kb on - strandat 4377.437 kb on - strand, within HP15_4144at 4377.442 kb on - strand, within HP15_4144at 4377.455 kb on + strand, within HP15_4144at 4377.463 kb on - strand, within HP15_4144at 4377.466 kb on + strand, within HP15_4144at 4377.482 kb on - strand, within HP15_4144at 4377.507 kb on - strand, within HP15_4144at 4377.595 kb on + strand, within HP15_4144at 4377.727 kb on - strand, within HP15_4144at 4377.772 kb on - strand, within HP15_4144at 4377.788 kb on + strand, within HP15_4144at 4377.835 kb on - strand, within HP15_4144at 4377.858 kb on + strand, within HP15_4144at 4377.866 kb on - strand, within HP15_4144at 4377.993 kb on - strand, within HP15_4144at 4378.015 kb on + strand, within HP15_4144at 4378.015 kb on + strand, within HP15_4144at 4378.015 kb on + strand, within HP15_4144at 4378.023 kb on - strand, within HP15_4144at 4378.023 kb on - strand, within HP15_4144at 4378.023 kb on - strand, within HP15_4144at 4378.023 kb on - strand, within HP15_4144at 4378.080 kb on - strand, within HP15_4144at 4378.184 kb on + strand, within HP15_4144at 4378.194 kb on + strand, within HP15_4144at 4378.200 kb on - strand, within HP15_4144at 4378.213 kb on + strand, within HP15_4144at 4378.215 kb on + strand, within HP15_4144at 4378.242 kb on - strand, within HP15_4144at 4378.247 kb on - strand, within HP15_4144at 4378.247 kb on - strand, within HP15_4144

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Dimethyl Sulfoxide 7.5 vol%
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4,375,565 + -2.2
4,375,565 + -0.3
4,375,573 - +0.5
4,375,698 + +0.6
4,375,726 + HP15_4142 0.11 -0.3
4,375,854 + HP15_4142 0.27 +0.7
4,375,884 + HP15_4142 0.31 +0.2
4,375,892 - HP15_4142 0.32 -0.2
4,375,901 + HP15_4142 0.33 +0.8
4,376,068 - HP15_4142 0.55 -0.1
4,376,131 + HP15_4142 0.63 -0.4
4,376,185 + HP15_4142 0.70 +0.1
4,376,185 + HP15_4142 0.70 -0.7
4,376,185 + HP15_4142 0.70 +0.6
4,376,185 + HP15_4142 0.70 +0.2
4,376,185 + HP15_4142 0.70 +1.2
4,376,193 - HP15_4142 0.71 -0.2
4,376,193 - HP15_4142 0.71 -0.2
4,376,198 + HP15_4142 0.71 +1.5
4,376,307 - HP15_4142 0.85 -0.6
4,376,317 + HP15_4142 0.86 -0.8
4,376,322 + HP15_4142 0.87 -0.1
4,376,327 + HP15_4142 0.88 -0.6
4,376,340 - HP15_4142 0.89 -0.2
4,376,351 - -0.6
4,376,426 - +0.2
4,376,439 - -1.8
4,376,491 + -0.4
4,376,494 - +0.7
4,376,541 + HP15_4143 0.11 +0.8
4,376,546 + HP15_4143 0.11 +0.3
4,376,554 - HP15_4143 0.12 +0.1
4,376,605 - HP15_4143 0.19 +0.4
4,376,647 - HP15_4143 0.24 +1.8
4,376,647 - HP15_4143 0.24 +0.8
4,376,652 - HP15_4143 0.25 -0.1
4,376,664 + HP15_4143 0.26 +0.2
4,376,672 - HP15_4143 0.27 +0.3
4,376,674 + HP15_4143 0.27 +1.0
4,376,728 - HP15_4143 0.34 -0.5
4,376,733 - HP15_4143 0.35 +0.8
4,376,747 - HP15_4143 0.37 +0.3
4,376,782 + HP15_4143 0.41 -0.1
4,376,782 + HP15_4143 0.41 +0.2
4,376,812 - HP15_4143 0.45 -2.9
4,376,837 - HP15_4143 0.48 +0.8
4,376,918 + HP15_4143 0.58 -0.1
4,376,918 + HP15_4143 0.58 +0.8
4,376,926 - HP15_4143 0.59 +1.3
4,377,086 - HP15_4143 0.79 +0.6
4,377,088 + HP15_4143 0.79 +0.1
4,377,091 - HP15_4143 0.80 -0.0
4,377,096 - HP15_4143 0.80 +0.2
4,377,112 + HP15_4143 0.82 -0.4
4,377,120 - HP15_4143 0.83 +0.1
4,377,256 + +0.2
4,377,256 + -0.1
4,377,256 + -1.1
4,377,264 - +0.4
4,377,275 + +0.1
4,377,289 + -0.2
4,377,297 - -0.4
4,377,297 - -0.4
4,377,381 - +0.5
4,377,412 + +0.8
4,377,412 + +1.8
4,377,412 + +0.8
4,377,415 - +0.5
4,377,420 - -0.1
4,377,420 - +1.8
4,377,420 - +0.1
4,377,420 - +0.7
4,377,420 - +0.1
4,377,422 + +1.1
4,377,422 + +1.0
4,377,430 - +0.1
4,377,437 - HP15_4144 0.10 -0.6
4,377,442 - HP15_4144 0.11 +0.2
4,377,455 + HP15_4144 0.11 +0.0
4,377,463 - HP15_4144 0.12 +0.2
4,377,466 + HP15_4144 0.12 +1.4
4,377,482 - HP15_4144 0.13 +0.0
4,377,507 - HP15_4144 0.14 +0.2
4,377,595 + HP15_4144 0.19 +1.0
4,377,727 - HP15_4144 0.27 -0.2
4,377,772 - HP15_4144 0.30 -0.4
4,377,788 + HP15_4144 0.31 -0.2
4,377,835 - HP15_4144 0.33 -0.5
4,377,858 + HP15_4144 0.35 +0.5
4,377,866 - HP15_4144 0.35 +0.3
4,377,993 - HP15_4144 0.42 +0.2
4,378,015 + HP15_4144 0.44 +0.1
4,378,015 + HP15_4144 0.44 -0.2
4,378,015 + HP15_4144 0.44 +0.6
4,378,023 - HP15_4144 0.44 -0.3
4,378,023 - HP15_4144 0.44 +0.5
4,378,023 - HP15_4144 0.44 -0.1
4,378,023 - HP15_4144 0.44 -1.2
4,378,080 - HP15_4144 0.47 -0.0
4,378,184 + HP15_4144 0.53 -0.4
4,378,194 + HP15_4144 0.54 +0.1
4,378,200 - HP15_4144 0.54 +0.3
4,378,213 + HP15_4144 0.55 -0.6
4,378,215 + HP15_4144 0.55 +0.1
4,378,242 - HP15_4144 0.57 +1.0
4,378,247 - HP15_4144 0.57 -1.2
4,378,247 - HP15_4144 0.57 -0.2

Or see this region's nucleotide sequence