Strain Fitness in Marinobacter adhaerens HP15 around HP15_4

Experiment: m.b. Dimethyl Sulfoxide 7.5 vol%

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntHP15_2 and HP15_3 are separated by 29 nucleotidesHP15_3 and HP15_4 are separated by 424 nucleotidesHP15_4 and HP15_5 are separated by 77 nucleotides HP15_2: HP15_2 - acyl-CoA dehydrogenase domain protein, at 1,209 to 2,378 _2 HP15_3: HP15_3 - transcriptional Regulator, MerR family protein-like protein, at 2,408 to 2,674 _3 HP15_4: HP15_4 - alcohol dehydrogenase zinc-binding domain protein, at 3,099 to 4,025 _4 HP15_5: HP15_5 - acetyl-CoA acetyltransferase, at 4,103 to 5,353 _5 Position (kb) 3 4 5Strain fitness (log2 ratio) -1 0 1 2 3at 2.687 kb on + strandat 2.751 kb on + strandat 2.762 kb on + strandat 2.852 kb on + strandat 2.853 kb on + strandat 2.860 kb on - strandat 3.063 kb on + strandat 3.063 kb on + strandat 3.065 kb on + strandat 3.073 kb on + strandat 3.083 kb on - strandat 3.107 kb on - strandat 3.138 kb on + strandat 3.188 kb on + strandat 3.222 kb on + strand, within HP15_4at 3.266 kb on + strand, within HP15_4at 3.274 kb on - strand, within HP15_4at 3.274 kb on - strand, within HP15_4at 3.279 kb on - strand, within HP15_4at 3.350 kb on - strand, within HP15_4at 3.364 kb on + strand, within HP15_4at 3.405 kb on - strand, within HP15_4at 3.414 kb on + strand, within HP15_4at 3.601 kb on - strand, within HP15_4at 3.610 kb on - strand, within HP15_4at 3.635 kb on - strand, within HP15_4at 3.635 kb on - strand, within HP15_4at 3.671 kb on + strand, within HP15_4at 3.738 kb on + strand, within HP15_4at 3.747 kb on - strand, within HP15_4at 3.764 kb on - strand, within HP15_4at 3.766 kb on - strand, within HP15_4at 3.802 kb on - strand, within HP15_4at 3.853 kb on - strand, within HP15_4at 3.862 kb on + strand, within HP15_4at 3.865 kb on - strand, within HP15_4at 3.870 kb on - strand, within HP15_4at 3.873 kb on + strand, within HP15_4at 3.873 kb on + strand, within HP15_4at 3.875 kb on - strand, within HP15_4at 3.875 kb on - strand, within HP15_4at 3.881 kb on - strand, within HP15_4at 3.881 kb on - strand, within HP15_4at 3.917 kb on + strand, within HP15_4at 3.917 kb on + strand, within HP15_4at 3.925 kb on - strand, within HP15_4at 3.925 kb on - strand, within HP15_4at 3.936 kb on + strandat 3.967 kb on - strandat 3.994 kb on + strandat 4.052 kb on + strandat 4.064 kb on + strandat 4.072 kb on - strandat 4.072 kb on - strandat 4.072 kb on - strandat 4.072 kb on - strandat 4.092 kb on - strandat 4.108 kb on - strandat 4.130 kb on + strandat 4.130 kb on + strandat 4.130 kb on + strandat 4.167 kb on + strandat 4.338 kb on + strand, within HP15_5at 4.355 kb on + strand, within HP15_5at 4.416 kb on - strand, within HP15_5at 4.460 kb on - strand, within HP15_5at 4.460 kb on - strand, within HP15_5at 4.471 kb on + strand, within HP15_5at 4.471 kb on + strand, within HP15_5at 4.478 kb on + strand, within HP15_5at 4.555 kb on + strand, within HP15_5at 4.659 kb on + strand, within HP15_5at 4.659 kb on + strand, within HP15_5at 4.804 kb on - strand, within HP15_5at 4.881 kb on + strand, within HP15_5at 4.935 kb on - strand, within HP15_5

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Dimethyl Sulfoxide 7.5 vol%
remove
2,687 + -0.1
2,751 + -0.1
2,762 + -0.9
2,852 + +0.5
2,853 + -0.0
2,860 - -0.0
3,063 + -0.6
3,063 + +0.2
3,065 + -0.2
3,073 + +0.6
3,083 - -0.1
3,107 - -0.7
3,138 + +0.8
3,188 + +0.4
3,222 + HP15_4 0.13 -0.8
3,266 + HP15_4 0.18 +0.3
3,274 - HP15_4 0.19 +0.8
3,274 - HP15_4 0.19 -1.5
3,279 - HP15_4 0.19 +0.1
3,350 - HP15_4 0.27 -1.4
3,364 + HP15_4 0.29 -0.3
3,405 - HP15_4 0.33 -0.3
3,414 + HP15_4 0.34 -0.2
3,601 - HP15_4 0.54 +0.2
3,610 - HP15_4 0.55 +0.3
3,635 - HP15_4 0.58 -1.4
3,635 - HP15_4 0.58 -0.1
3,671 + HP15_4 0.62 -0.6
3,738 + HP15_4 0.69 +0.6
3,747 - HP15_4 0.70 -1.2
3,764 - HP15_4 0.72 +0.6
3,766 - HP15_4 0.72 +0.0
3,802 - HP15_4 0.76 -0.4
3,853 - HP15_4 0.81 -1.2
3,862 + HP15_4 0.82 -1.3
3,865 - HP15_4 0.83 -0.1
3,870 - HP15_4 0.83 -0.4
3,873 + HP15_4 0.83 +0.1
3,873 + HP15_4 0.83 -0.9
3,875 - HP15_4 0.84 +0.2
3,875 - HP15_4 0.84 +1.1
3,881 - HP15_4 0.84 -0.5
3,881 - HP15_4 0.84 -0.6
3,917 + HP15_4 0.88 -0.5
3,917 + HP15_4 0.88 -0.4
3,925 - HP15_4 0.89 +3.6
3,925 - HP15_4 0.89 -0.2
3,936 + +0.6
3,967 - +1.3
3,994 + -0.0
4,052 + -0.5
4,064 + -0.6
4,072 - +0.3
4,072 - +0.1
4,072 - -0.2
4,072 - -0.2
4,092 - +0.6
4,108 - +0.3
4,130 + +0.0
4,130 + -0.3
4,130 + +0.6
4,167 + +0.5
4,338 + HP15_5 0.19 -0.2
4,355 + HP15_5 0.20 +0.6
4,416 - HP15_5 0.25 -0.0
4,460 - HP15_5 0.29 -0.2
4,460 - HP15_5 0.29 +0.4
4,471 + HP15_5 0.29 +0.8
4,471 + HP15_5 0.29 +0.3
4,478 + HP15_5 0.30 -0.6
4,555 + HP15_5 0.36 +0.2
4,659 + HP15_5 0.44 +0.1
4,659 + HP15_5 0.44 +0.4
4,804 - HP15_5 0.56 +0.3
4,881 + HP15_5 0.62 +0.5
4,935 - HP15_5 0.67 -0.4

Or see this region's nucleotide sequence