Experiment: m.b. Dimethyl Sulfoxide 7.5 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3586 and HP15_3587 are separated by 619 nucleotides HP15_3587 and HP15_3588 are separated by 117 nucleotides HP15_3588 and HP15_3589 are separated by 36 nucleotides
HP15_3586: HP15_3586 - membrane protein containing DUF6, transmembrane, at 3,776,271 to 3,777,221
_3586
HP15_3587: HP15_3587 - membrane-associated metal-dependent hydrolase, at 3,777,841 to 3,779,487
_3587
HP15_3588: HP15_3588 - ChaC family protein, at 3,779,605 to 3,780,171
_3588
HP15_3589: HP15_3589 - multiple antibiotic resistance (MarC)-related protein, at 3,780,208 to 3,780,831
_3589
Position (kb)
3777
3778
3779
3780 Strain fitness (log2 ratio)
-1
0
1
2 at 3776.926 kb on + strand, within HP15_3586 at 3776.988 kb on + strand, within HP15_3586 at 3776.988 kb on + strand, within HP15_3586 at 3776.988 kb on + strand, within HP15_3586 at 3776.996 kb on - strand, within HP15_3586 at 3776.996 kb on - strand, within HP15_3586 at 3777.093 kb on + strand, within HP15_3586 at 3777.179 kb on - strand at 3777.284 kb on + strand at 3777.429 kb on + strand at 3777.435 kb on + strand at 3777.442 kb on - strand at 3777.453 kb on + strand at 3777.506 kb on - strand at 3777.508 kb on - strand at 3777.525 kb on - strand at 3777.607 kb on - strand at 3777.659 kb on - strand at 3777.679 kb on - strand at 3777.691 kb on + strand at 3777.848 kb on + strand at 3777.856 kb on - strand at 3777.896 kb on - strand at 3777.915 kb on + strand at 3777.920 kb on + strand at 3777.940 kb on + strand at 3777.971 kb on - strand at 3778.110 kb on + strand, within HP15_3587 at 3778.118 kb on - strand, within HP15_3587 at 3778.123 kb on + strand, within HP15_3587 at 3778.133 kb on + strand, within HP15_3587 at 3778.236 kb on + strand, within HP15_3587 at 3778.311 kb on + strand, within HP15_3587 at 3778.319 kb on - strand, within HP15_3587 at 3778.383 kb on + strand, within HP15_3587 at 3778.391 kb on + strand, within HP15_3587 at 3778.391 kb on + strand, within HP15_3587 at 3778.399 kb on - strand, within HP15_3587 at 3778.399 kb on - strand, within HP15_3587 at 3778.420 kb on - strand, within HP15_3587 at 3778.425 kb on - strand, within HP15_3587 at 3778.425 kb on - strand, within HP15_3587 at 3778.472 kb on + strand, within HP15_3587 at 3778.507 kb on + strand, within HP15_3587 at 3778.528 kb on + strand, within HP15_3587 at 3778.528 kb on + strand, within HP15_3587 at 3778.555 kb on + strand, within HP15_3587 at 3778.563 kb on - strand, within HP15_3587 at 3778.578 kb on + strand, within HP15_3587 at 3778.583 kb on + strand, within HP15_3587 at 3778.583 kb on + strand, within HP15_3587 at 3778.698 kb on + strand, within HP15_3587 at 3778.706 kb on - strand, within HP15_3587 at 3778.706 kb on - strand, within HP15_3587 at 3778.709 kb on + strand, within HP15_3587 at 3778.717 kb on - strand, within HP15_3587 at 3778.760 kb on - strand, within HP15_3587 at 3778.779 kb on + strand, within HP15_3587 at 3778.970 kb on - strand, within HP15_3587 at 3779.121 kb on + strand, within HP15_3587 at 3779.146 kb on + strand, within HP15_3587 at 3779.201 kb on + strand, within HP15_3587 at 3779.251 kb on + strand, within HP15_3587 at 3779.259 kb on - strand, within HP15_3587 at 3779.277 kb on - strand, within HP15_3587 at 3779.306 kb on - strand, within HP15_3587 at 3779.393 kb on + strand at 3779.412 kb on + strand at 3779.412 kb on + strand at 3779.412 kb on + strand at 3779.412 kb on + strand at 3779.420 kb on - strand at 3779.425 kb on + strand at 3779.511 kb on + strand at 3779.526 kb on - strand at 3779.582 kb on + strand at 3779.614 kb on - strand at 3779.637 kb on + strand at 3779.901 kb on + strand, within HP15_3588 at 3779.929 kb on + strand, within HP15_3588 at 3779.935 kb on - strand, within HP15_3588 at 3779.947 kb on - strand, within HP15_3588 at 3779.979 kb on + strand, within HP15_3588 at 3779.987 kb on - strand, within HP15_3588 at 3780.054 kb on + strand, within HP15_3588 at 3780.085 kb on - strand, within HP15_3588 at 3780.169 kb on + strand at 3780.213 kb on - strand at 3780.298 kb on + strand, within HP15_3589
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Dimethyl Sulfoxide 7.5 vol% remove 3,776,926 + HP15_3586 0.69 -0.4 3,776,988 + HP15_3586 0.75 +0.5 3,776,988 + HP15_3586 0.75 +0.4 3,776,988 + HP15_3586 0.75 -1.4 3,776,996 - HP15_3586 0.76 +0.4 3,776,996 - HP15_3586 0.76 +0.5 3,777,093 + HP15_3586 0.86 -1.0 3,777,179 - +0.1 3,777,284 + +0.3 3,777,429 + +0.0 3,777,435 + -0.1 3,777,442 - -0.1 3,777,453 + +0.5 3,777,506 - -0.4 3,777,508 - +0.8 3,777,525 - +0.6 3,777,607 - -0.2 3,777,659 - +0.6 3,777,679 - -0.3 3,777,691 + +0.3 3,777,848 + -0.9 3,777,856 - +0.6 3,777,896 - -0.1 3,777,915 + +0.6 3,777,920 + -0.8 3,777,940 + +0.5 3,777,971 - +0.7 3,778,110 + HP15_3587 0.16 +0.6 3,778,118 - HP15_3587 0.17 -0.1 3,778,123 + HP15_3587 0.17 -0.2 3,778,133 + HP15_3587 0.18 -1.1 3,778,236 + HP15_3587 0.24 +0.4 3,778,311 + HP15_3587 0.29 -0.1 3,778,319 - HP15_3587 0.29 +0.5 3,778,383 + HP15_3587 0.33 -0.5 3,778,391 + HP15_3587 0.33 +1.1 3,778,391 + HP15_3587 0.33 +1.1 3,778,399 - HP15_3587 0.34 +0.4 3,778,399 - HP15_3587 0.34 +0.1 3,778,420 - HP15_3587 0.35 -0.6 3,778,425 - HP15_3587 0.35 +0.9 3,778,425 - HP15_3587 0.35 +0.1 3,778,472 + HP15_3587 0.38 +0.7 3,778,507 + HP15_3587 0.40 +0.1 3,778,528 + HP15_3587 0.42 +0.4 3,778,528 + HP15_3587 0.42 +0.2 3,778,555 + HP15_3587 0.43 +0.7 3,778,563 - HP15_3587 0.44 +0.7 3,778,578 + HP15_3587 0.45 -0.3 3,778,583 + HP15_3587 0.45 -0.1 3,778,583 + HP15_3587 0.45 +2.5 3,778,698 + HP15_3587 0.52 +0.2 3,778,706 - HP15_3587 0.53 +0.7 3,778,706 - HP15_3587 0.53 +0.6 3,778,709 + HP15_3587 0.53 -0.5 3,778,717 - HP15_3587 0.53 +0.8 3,778,760 - HP15_3587 0.56 +0.4 3,778,779 + HP15_3587 0.57 -0.1 3,778,970 - HP15_3587 0.69 +0.1 3,779,121 + HP15_3587 0.78 +0.3 3,779,146 + HP15_3587 0.79 -0.8 3,779,201 + HP15_3587 0.83 -0.5 3,779,251 + HP15_3587 0.86 -0.4 3,779,259 - HP15_3587 0.86 -0.0 3,779,277 - HP15_3587 0.87 +0.2 3,779,306 - HP15_3587 0.89 -0.2 3,779,393 + +0.3 3,779,412 + +0.5 3,779,412 + -0.7 3,779,412 + +0.1 3,779,412 + -0.5 3,779,420 - +0.6 3,779,425 + -0.1 3,779,511 + +1.1 3,779,526 - +0.1 3,779,582 + -0.3 3,779,614 - -0.9 3,779,637 + -0.8 3,779,901 + HP15_3588 0.52 +0.4 3,779,929 + HP15_3588 0.57 -0.1 3,779,935 - HP15_3588 0.58 -0.3 3,779,947 - HP15_3588 0.60 -0.1 3,779,979 + HP15_3588 0.66 +1.2 3,779,987 - HP15_3588 0.67 +0.1 3,780,054 + HP15_3588 0.79 +0.3 3,780,085 - HP15_3588 0.85 -0.8 3,780,169 + +0.9 3,780,213 - +1.0 3,780,298 + HP15_3589 0.14 +1.1
Or see this region's nucleotide sequence