Strain Fitness in Marinobacter adhaerens HP15 around HP15_3236

Experiment: m.b. Dimethyl Sulfoxide 7.5 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_3234 and HP15_3235 are separated by 77 nucleotidesHP15_3235 and HP15_3236 overlap by 6 nucleotidesHP15_3236 and HP15_3237 overlap by 4 nucleotidesHP15_3237 and HP15_3238 are separated by 13 nucleotidesHP15_3238 and HP15_3239 are separated by 7 nucleotides HP15_3234: HP15_3234 - isocitrate lyase, at 3,388,267 to 3,389,859 _3234 HP15_3235: HP15_3235 - hypothetical protein, at 3,389,937 to 3,390,176 _3235 HP15_3236: HP15_3236 - membrane protein containing DUF1538, at 3,390,171 to 3,391,631 _3236 HP15_3237: HP15_3237 - nitrogen regulatory protein P-II family protein-like protein, at 3,391,628 to 3,391,978 _3237 HP15_3238: HP15_3238 - protein containing cystathionine beta-synthase, core domain, at 3,391,992 to 3,392,381 _3238 HP15_3239: HP15_3239 - ion channel DMI1, at 3,392,389 to 3,394,335 _3239 Position (kb) 3390 3391 3392Strain fitness (log2 ratio) -2 -1 0 1at 3389.203 kb on - strand, within HP15_3234at 3389.277 kb on + strand, within HP15_3234at 3389.383 kb on - strand, within HP15_3234at 3389.414 kb on + strand, within HP15_3234at 3389.462 kb on + strand, within HP15_3234at 3389.462 kb on + strand, within HP15_3234at 3389.462 kb on + strand, within HP15_3234at 3389.470 kb on - strand, within HP15_3234at 3389.470 kb on - strand, within HP15_3234at 3389.481 kb on + strand, within HP15_3234at 3389.576 kb on - strand, within HP15_3234at 3389.705 kb on + strandat 3389.734 kb on + strandat 3389.734 kb on + strandat 3389.734 kb on + strandat 3389.843 kb on - strandat 3389.843 kb on - strandat 3389.852 kb on - strandat 3389.916 kb on + strandat 3389.960 kb on + strandat 3389.971 kb on + strand, within HP15_3235at 3390.086 kb on + strand, within HP15_3235at 3390.109 kb on + strand, within HP15_3235at 3390.115 kb on + strand, within HP15_3235at 3390.166 kb on + strandat 3390.281 kb on - strandat 3390.316 kb on + strandat 3390.324 kb on - strand, within HP15_3236at 3390.324 kb on - strand, within HP15_3236at 3390.324 kb on - strand, within HP15_3236at 3390.324 kb on - strand, within HP15_3236at 3390.324 kb on - strand, within HP15_3236at 3390.387 kb on + strand, within HP15_3236at 3390.413 kb on + strand, within HP15_3236at 3390.496 kb on - strand, within HP15_3236at 3390.516 kb on - strand, within HP15_3236at 3390.531 kb on + strand, within HP15_3236at 3390.544 kb on + strand, within HP15_3236at 3390.686 kb on + strand, within HP15_3236at 3390.766 kb on + strand, within HP15_3236at 3390.774 kb on - strand, within HP15_3236at 3390.815 kb on + strand, within HP15_3236at 3390.851 kb on - strand, within HP15_3236at 3390.864 kb on + strand, within HP15_3236at 3390.879 kb on - strand, within HP15_3236at 3391.046 kb on + strand, within HP15_3236at 3391.047 kb on + strand, within HP15_3236at 3391.059 kb on + strand, within HP15_3236at 3391.059 kb on + strand, within HP15_3236at 3391.067 kb on - strand, within HP15_3236at 3391.113 kb on - strand, within HP15_3236at 3391.133 kb on + strand, within HP15_3236at 3391.235 kb on + strand, within HP15_3236at 3391.278 kb on - strand, within HP15_3236at 3391.401 kb on + strand, within HP15_3236at 3391.452 kb on - strand, within HP15_3236at 3391.493 kb on - strandat 3391.506 kb on - strandat 3391.523 kb on - strandat 3391.556 kb on - strandat 3391.557 kb on - strandat 3391.670 kb on + strand, within HP15_3237at 3391.774 kb on + strand, within HP15_3237at 3391.881 kb on + strand, within HP15_3237at 3391.894 kb on - strand, within HP15_3237at 3391.923 kb on + strand, within HP15_3237at 3391.941 kb on - strand, within HP15_3237at 3391.967 kb on + strandat 3391.987 kb on - strandat 3392.076 kb on + strand, within HP15_3238at 3392.076 kb on + strand, within HP15_3238at 3392.076 kb on + strand, within HP15_3238at 3392.369 kb on - strandat 3392.409 kb on - strandat 3392.411 kb on - strandat 3392.435 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Dimethyl Sulfoxide 7.5 vol%
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3,389,203 - HP15_3234 0.59 +0.0
3,389,277 + HP15_3234 0.63 +0.7
3,389,383 - HP15_3234 0.70 +0.3
3,389,414 + HP15_3234 0.72 -0.5
3,389,462 + HP15_3234 0.75 -0.5
3,389,462 + HP15_3234 0.75 +0.0
3,389,462 + HP15_3234 0.75 -0.9
3,389,470 - HP15_3234 0.76 -0.6
3,389,470 - HP15_3234 0.76 -0.1
3,389,481 + HP15_3234 0.76 -0.5
3,389,576 - HP15_3234 0.82 +0.5
3,389,705 + +1.1
3,389,734 + +0.7
3,389,734 + +0.5
3,389,734 + -0.2
3,389,843 - +0.4
3,389,843 - +0.3
3,389,852 - +0.7
3,389,916 + +0.5
3,389,960 + -0.6
3,389,971 + HP15_3235 0.14 -0.1
3,390,086 + HP15_3235 0.62 -0.0
3,390,109 + HP15_3235 0.72 +0.7
3,390,115 + HP15_3235 0.74 -0.7
3,390,166 + +0.9
3,390,281 - +0.6
3,390,316 + +1.0
3,390,324 - HP15_3236 0.10 +0.1
3,390,324 - HP15_3236 0.10 -0.3
3,390,324 - HP15_3236 0.10 -0.5
3,390,324 - HP15_3236 0.10 +0.1
3,390,324 - HP15_3236 0.10 -0.4
3,390,387 + HP15_3236 0.15 -1.5
3,390,413 + HP15_3236 0.17 -0.7
3,390,496 - HP15_3236 0.22 -0.3
3,390,516 - HP15_3236 0.24 -1.0
3,390,531 + HP15_3236 0.25 +0.5
3,390,544 + HP15_3236 0.26 -0.3
3,390,686 + HP15_3236 0.35 -2.5
3,390,766 + HP15_3236 0.41 -0.3
3,390,774 - HP15_3236 0.41 -0.2
3,390,815 + HP15_3236 0.44 -0.5
3,390,851 - HP15_3236 0.47 -0.9
3,390,864 + HP15_3236 0.47 +0.2
3,390,879 - HP15_3236 0.48 +0.0
3,391,046 + HP15_3236 0.60 -1.1
3,391,047 + HP15_3236 0.60 -0.2
3,391,059 + HP15_3236 0.61 -0.3
3,391,059 + HP15_3236 0.61 +0.2
3,391,067 - HP15_3236 0.61 -0.6
3,391,113 - HP15_3236 0.64 +0.9
3,391,133 + HP15_3236 0.66 +0.4
3,391,235 + HP15_3236 0.73 -0.9
3,391,278 - HP15_3236 0.76 -0.0
3,391,401 + HP15_3236 0.84 +0.2
3,391,452 - HP15_3236 0.88 +0.5
3,391,493 - -0.4
3,391,506 - -0.4
3,391,523 - +0.9
3,391,556 - +0.6
3,391,557 - +0.4
3,391,670 + HP15_3237 0.12 +0.4
3,391,774 + HP15_3237 0.42 -0.5
3,391,881 + HP15_3237 0.72 -0.1
3,391,894 - HP15_3237 0.76 +0.6
3,391,923 + HP15_3237 0.84 -1.2
3,391,941 - HP15_3237 0.89 -2.1
3,391,967 + -0.4
3,391,987 - +0.1
3,392,076 + HP15_3238 0.22 +0.3
3,392,076 + HP15_3238 0.22 -0.6
3,392,076 + HP15_3238 0.22 +0.2
3,392,369 - +0.6
3,392,409 - -0.1
3,392,411 - -0.4
3,392,435 + -1.3

Or see this region's nucleotide sequence