Strain Fitness in Marinobacter adhaerens HP15 around HP15_313

Experiment: m.b. Dimethyl Sulfoxide 7.5 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_312 and HP15_313 are separated by 157 nucleotidesHP15_313 and HP15_314 are separated by 12 nucleotides HP15_312: HP15_312 - protein containing Molybdopterin oxidoreductase/molybdopterin dinucleotide-binding region, at 303,951 to 306,245 _312 HP15_313: HP15_313 - conserved hypothetical protein, secreted, at 306,403 to 309,630 _313 HP15_314: HP15_314 - membrane protein involved in aromatic hydrocarbon degradation, at 309,643 to 310,980 _314 Position (kb) 306 307 308 309 310Strain fitness (log2 ratio) -2 -1 0 1 2 3at 305.559 kb on + strand, within HP15_312at 305.562 kb on + strand, within HP15_312at 305.632 kb on + strand, within HP15_312at 305.663 kb on + strand, within HP15_312at 305.671 kb on + strand, within HP15_312at 305.679 kb on - strand, within HP15_312at 305.731 kb on - strand, within HP15_312at 305.828 kb on - strand, within HP15_312at 305.837 kb on + strand, within HP15_312at 305.999 kb on + strand, within HP15_312at 306.069 kb on + strandat 306.077 kb on - strandat 306.122 kb on - strandat 306.148 kb on + strandat 306.203 kb on - strandat 306.265 kb on - strandat 306.341 kb on + strandat 306.341 kb on + strandat 306.341 kb on + strandat 306.341 kb on + strandat 306.341 kb on + strandat 306.341 kb on + strandat 306.349 kb on - strandat 306.349 kb on - strandat 306.369 kb on - strandat 306.373 kb on + strandat 306.400 kb on - strandat 306.407 kb on - strandat 306.521 kb on - strandat 306.534 kb on + strandat 306.534 kb on + strandat 306.542 kb on - strandat 306.557 kb on - strandat 306.626 kb on - strandat 306.761 kb on - strand, within HP15_313at 306.761 kb on - strand, within HP15_313at 306.788 kb on + strand, within HP15_313at 306.841 kb on + strand, within HP15_313at 306.914 kb on + strand, within HP15_313at 306.914 kb on + strand, within HP15_313at 306.960 kb on + strand, within HP15_313at 306.968 kb on - strand, within HP15_313at 306.994 kb on + strand, within HP15_313at 307.002 kb on - strand, within HP15_313at 307.132 kb on - strand, within HP15_313at 307.139 kb on + strand, within HP15_313at 307.147 kb on - strand, within HP15_313at 307.147 kb on - strand, within HP15_313at 307.152 kb on - strand, within HP15_313at 307.184 kb on - strand, within HP15_313at 307.184 kb on - strand, within HP15_313at 307.184 kb on - strand, within HP15_313at 307.281 kb on - strand, within HP15_313at 307.281 kb on - strand, within HP15_313at 307.332 kb on - strand, within HP15_313at 307.438 kb on + strand, within HP15_313at 307.438 kb on + strand, within HP15_313at 307.445 kb on - strand, within HP15_313at 307.474 kb on + strand, within HP15_313at 307.479 kb on + strand, within HP15_313at 307.484 kb on + strand, within HP15_313at 307.498 kb on - strand, within HP15_313at 307.617 kb on + strand, within HP15_313at 307.667 kb on + strand, within HP15_313at 307.680 kb on - strand, within HP15_313at 307.682 kb on + strand, within HP15_313at 307.703 kb on + strand, within HP15_313at 307.703 kb on + strand, within HP15_313at 307.711 kb on - strand, within HP15_313at 307.751 kb on - strand, within HP15_313at 307.786 kb on + strand, within HP15_313at 307.926 kb on - strand, within HP15_313at 308.113 kb on - strand, within HP15_313at 308.152 kb on + strand, within HP15_313at 308.176 kb on + strand, within HP15_313at 308.234 kb on + strand, within HP15_313at 308.242 kb on - strand, within HP15_313at 308.253 kb on + strand, within HP15_313at 308.327 kb on + strand, within HP15_313at 308.357 kb on - strand, within HP15_313at 308.359 kb on + strand, within HP15_313at 308.390 kb on + strand, within HP15_313at 308.409 kb on + strand, within HP15_313at 308.505 kb on - strand, within HP15_313at 308.561 kb on - strand, within HP15_313at 308.577 kb on - strand, within HP15_313at 308.652 kb on + strand, within HP15_313at 308.664 kb on + strand, within HP15_313at 308.672 kb on - strand, within HP15_313at 308.827 kb on - strand, within HP15_313at 308.871 kb on + strand, within HP15_313at 308.879 kb on - strand, within HP15_313at 308.901 kb on + strand, within HP15_313at 308.901 kb on + strand, within HP15_313at 308.909 kb on - strand, within HP15_313at 308.909 kb on - strand, within HP15_313at 308.909 kb on - strand, within HP15_313at 308.911 kb on - strand, within HP15_313at 308.911 kb on - strand, within HP15_313at 308.920 kb on + strand, within HP15_313at 308.955 kb on - strand, within HP15_313at 309.097 kb on - strand, within HP15_313at 309.136 kb on + strand, within HP15_313at 309.249 kb on + strand, within HP15_313at 309.391 kb on - strandat 309.515 kb on + strandat 309.523 kb on - strandat 309.523 kb on - strandat 309.584 kb on + strandat 309.606 kb on + strandat 309.641 kb on + strandat 309.729 kb on + strandat 309.729 kb on + strandat 309.785 kb on + strand, within HP15_314at 309.785 kb on + strand, within HP15_314at 309.795 kb on + strand, within HP15_314at 309.892 kb on - strand, within HP15_314at 309.892 kb on - strand, within HP15_314at 310.010 kb on - strand, within HP15_314at 310.192 kb on - strand, within HP15_314at 310.270 kb on + strand, within HP15_314at 310.300 kb on - strand, within HP15_314

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Dimethyl Sulfoxide 7.5 vol%
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305,559 + HP15_312 0.70 -1.2
305,562 + HP15_312 0.70 +0.7
305,632 + HP15_312 0.73 -0.6
305,663 + HP15_312 0.75 +0.2
305,671 + HP15_312 0.75 +0.2
305,679 - HP15_312 0.75 -0.1
305,731 - HP15_312 0.78 -0.0
305,828 - HP15_312 0.82 +0.5
305,837 + HP15_312 0.82 -0.9
305,999 + HP15_312 0.89 +0.0
306,069 + -0.6
306,077 - -1.5
306,122 - -0.2
306,148 + -1.0
306,203 - +0.6
306,265 - -0.4
306,341 + -0.2
306,341 + -0.2
306,341 + -1.1
306,341 + +0.4
306,341 + -1.3
306,341 + -0.1
306,349 - +0.2
306,349 - +0.7
306,369 - +0.3
306,373 + -0.3
306,400 - +0.7
306,407 - -0.1
306,521 - +1.1
306,534 + +0.3
306,534 + +0.3
306,542 - -0.0
306,557 - -0.3
306,626 - +0.1
306,761 - HP15_313 0.11 +0.3
306,761 - HP15_313 0.11 +0.6
306,788 + HP15_313 0.12 -0.4
306,841 + HP15_313 0.14 +1.1
306,914 + HP15_313 0.16 +0.7
306,914 + HP15_313 0.16 +0.9
306,960 + HP15_313 0.17 -0.2
306,968 - HP15_313 0.18 -0.2
306,994 + HP15_313 0.18 -0.4
307,002 - HP15_313 0.19 +0.1
307,132 - HP15_313 0.23 +2.0
307,139 + HP15_313 0.23 -0.0
307,147 - HP15_313 0.23 +0.2
307,147 - HP15_313 0.23 +0.4
307,152 - HP15_313 0.23 +2.3
307,184 - HP15_313 0.24 +0.7
307,184 - HP15_313 0.24 -0.6
307,184 - HP15_313 0.24 +0.0
307,281 - HP15_313 0.27 +0.1
307,281 - HP15_313 0.27 -0.5
307,332 - HP15_313 0.29 +2.7
307,438 + HP15_313 0.32 +1.3
307,438 + HP15_313 0.32 -0.1
307,445 - HP15_313 0.32 +0.5
307,474 + HP15_313 0.33 +0.3
307,479 + HP15_313 0.33 +0.9
307,484 + HP15_313 0.33 -1.6
307,498 - HP15_313 0.34 +0.2
307,617 + HP15_313 0.38 +0.1
307,667 + HP15_313 0.39 +0.4
307,680 - HP15_313 0.40 -0.2
307,682 + HP15_313 0.40 +1.3
307,703 + HP15_313 0.40 +0.7
307,703 + HP15_313 0.40 +0.4
307,711 - HP15_313 0.41 -0.1
307,751 - HP15_313 0.42 -0.2
307,786 + HP15_313 0.43 -0.3
307,926 - HP15_313 0.47 -0.7
308,113 - HP15_313 0.53 -0.3
308,152 + HP15_313 0.54 +0.2
308,176 + HP15_313 0.55 +0.2
308,234 + HP15_313 0.57 +0.6
308,242 - HP15_313 0.57 -0.9
308,253 + HP15_313 0.57 +2.8
308,327 + HP15_313 0.60 +0.4
308,357 - HP15_313 0.61 +0.2
308,359 + HP15_313 0.61 -0.2
308,390 + HP15_313 0.62 +0.0
308,409 + HP15_313 0.62 +0.4
308,505 - HP15_313 0.65 +0.6
308,561 - HP15_313 0.67 -0.2
308,577 - HP15_313 0.67 +1.0
308,652 + HP15_313 0.70 +0.1
308,664 + HP15_313 0.70 +0.7
308,672 - HP15_313 0.70 -2.5
308,827 - HP15_313 0.75 -0.7
308,871 + HP15_313 0.76 -0.1
308,879 - HP15_313 0.77 +0.5
308,901 + HP15_313 0.77 -0.0
308,901 + HP15_313 0.77 +1.0
308,909 - HP15_313 0.78 +0.1
308,909 - HP15_313 0.78 +2.0
308,909 - HP15_313 0.78 +0.6
308,911 - HP15_313 0.78 +0.4
308,911 - HP15_313 0.78 -1.3
308,920 + HP15_313 0.78 -0.1
308,955 - HP15_313 0.79 +0.4
309,097 - HP15_313 0.83 +0.6
309,136 + HP15_313 0.85 +0.1
309,249 + HP15_313 0.88 -0.0
309,391 - +0.5
309,515 + -0.4
309,523 - -0.0
309,523 - -0.2
309,584 + -0.1
309,606 + -0.1
309,641 + +0.7
309,729 + +0.8
309,729 + +0.5
309,785 + HP15_314 0.11 -0.4
309,785 + HP15_314 0.11 +0.3
309,795 + HP15_314 0.11 +0.3
309,892 - HP15_314 0.19 -0.3
309,892 - HP15_314 0.19 +0.5
310,010 - HP15_314 0.27 +1.5
310,192 - HP15_314 0.41 -1.9
310,270 + HP15_314 0.47 -0.1
310,300 - HP15_314 0.49 +0.7

Or see this region's nucleotide sequence