Experiment: m.b. Dimethyl Sulfoxide 7.5 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_256 and HP15_257 are separated by 6 nucleotides HP15_257 and HP15_258 are separated by 83 nucleotides
HP15_256: HP15_256 - serine protease, at 245,359 to 247,575
_256
HP15_257: HP15_257 - transcriptional regulator, GntR family, at 247,582 to 248,259
_257
HP15_258: HP15_258 - phospholipase D/Transphosphatidylase, at 248,343 to 249,773
_258
Position (kb) 247
248
249 Strain fitness (log2 ratio) -2
-1
0
1 at 246.602 kb on - strand, within HP15_256 at 246.733 kb on - strand, within HP15_256 at 246.830 kb on + strand, within HP15_256 at 246.838 kb on - strand, within HP15_256 at 246.848 kb on - strand, within HP15_256 at 246.954 kb on + strand, within HP15_256 at 246.999 kb on + strand, within HP15_256 at 247.047 kb on - strand, within HP15_256 at 247.057 kb on - strand, within HP15_256 at 247.061 kb on - strand, within HP15_256 at 247.127 kb on - strand, within HP15_256 at 247.184 kb on + strand, within HP15_256 at 247.184 kb on + strand, within HP15_256 at 247.303 kb on + strand, within HP15_256 at 247.365 kb on + strand at 247.365 kb on + strand at 247.370 kb on + strand at 247.410 kb on - strand at 247.412 kb on + strand at 247.420 kb on - strand at 247.426 kb on + strand at 247.566 kb on + strand at 247.574 kb on - strand at 247.770 kb on - strand, within HP15_257 at 247.787 kb on + strand, within HP15_257 at 247.787 kb on + strand, within HP15_257 at 247.787 kb on + strand, within HP15_257 at 247.795 kb on - strand, within HP15_257 at 247.795 kb on - strand, within HP15_257 at 247.829 kb on + strand, within HP15_257 at 247.842 kb on - strand, within HP15_257 at 247.844 kb on + strand, within HP15_257 at 247.844 kb on + strand, within HP15_257 at 247.852 kb on - strand, within HP15_257 at 247.862 kb on - strand, within HP15_257 at 248.003 kb on + strand, within HP15_257 at 248.054 kb on + strand, within HP15_257 at 248.131 kb on - strand, within HP15_257 at 248.164 kb on - strand, within HP15_257 at 248.232 kb on + strand at 248.301 kb on - strand at 248.341 kb on + strand at 248.341 kb on + strand at 248.396 kb on - strand at 248.434 kb on + strand at 248.491 kb on - strand, within HP15_258 at 248.501 kb on - strand, within HP15_258 at 248.501 kb on - strand, within HP15_258 at 248.548 kb on + strand, within HP15_258 at 248.603 kb on - strand, within HP15_258 at 248.650 kb on + strand, within HP15_258 at 248.650 kb on + strand, within HP15_258 at 248.658 kb on - strand, within HP15_258 at 248.658 kb on - strand, within HP15_258 at 248.658 kb on - strand, within HP15_258 at 248.738 kb on + strand, within HP15_258 at 248.763 kb on + strand, within HP15_258 at 248.781 kb on - strand, within HP15_258 at 248.796 kb on - strand, within HP15_258 at 248.863 kb on + strand, within HP15_258 at 248.957 kb on - strand, within HP15_258 at 248.990 kb on - strand, within HP15_258 at 249.018 kb on + strand, within HP15_258 at 249.033 kb on + strand, within HP15_258 at 249.033 kb on + strand, within HP15_258 at 249.045 kb on + strand, within HP15_258 at 249.065 kb on + strand, within HP15_258
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Dimethyl Sulfoxide 7.5 vol% remove 246,602 - HP15_256 0.56 -0.7 246,733 - HP15_256 0.62 -1.1 246,830 + HP15_256 0.66 -0.6 246,838 - HP15_256 0.67 -1.3 246,848 - HP15_256 0.67 -1.1 246,954 + HP15_256 0.72 +0.3 246,999 + HP15_256 0.74 -1.0 247,047 - HP15_256 0.76 -0.2 247,057 - HP15_256 0.77 +0.9 247,061 - HP15_256 0.77 -1.4 247,127 - HP15_256 0.80 -0.6 247,184 + HP15_256 0.82 -0.6 247,184 + HP15_256 0.82 -1.2 247,303 + HP15_256 0.88 -2.1 247,365 + -1.3 247,365 + -1.4 247,370 + -0.4 247,410 - +0.5 247,412 + -0.7 247,420 - -0.8 247,426 + -0.7 247,566 + -0.6 247,574 - -0.2 247,770 - HP15_257 0.28 -0.9 247,787 + HP15_257 0.30 -1.5 247,787 + HP15_257 0.30 -0.1 247,787 + HP15_257 0.30 +0.3 247,795 - HP15_257 0.31 -0.0 247,795 - HP15_257 0.31 -1.2 247,829 + HP15_257 0.36 +0.7 247,842 - HP15_257 0.38 -0.2 247,844 + HP15_257 0.39 +0.2 247,844 + HP15_257 0.39 -2.2 247,852 - HP15_257 0.40 -0.2 247,862 - HP15_257 0.41 +0.7 248,003 + HP15_257 0.62 -1.2 248,054 + HP15_257 0.70 -2.0 248,131 - HP15_257 0.81 +0.2 248,164 - HP15_257 0.86 -1.3 248,232 + -1.3 248,301 - -1.0 248,341 + -0.9 248,341 + -0.6 248,396 - +1.7 248,434 + -1.1 248,491 - HP15_258 0.10 -1.3 248,501 - HP15_258 0.11 -1.4 248,501 - HP15_258 0.11 -0.3 248,548 + HP15_258 0.14 -0.3 248,603 - HP15_258 0.18 -0.9 248,650 + HP15_258 0.21 +0.0 248,650 + HP15_258 0.21 +0.3 248,658 - HP15_258 0.22 -0.7 248,658 - HP15_258 0.22 +1.4 248,658 - HP15_258 0.22 -1.6 248,738 + HP15_258 0.28 -1.0 248,763 + HP15_258 0.29 +0.5 248,781 - HP15_258 0.31 -1.0 248,796 - HP15_258 0.32 -0.3 248,863 + HP15_258 0.36 +0.4 248,957 - HP15_258 0.43 -1.0 248,990 - HP15_258 0.45 +1.0 249,018 + HP15_258 0.47 -1.0 249,033 + HP15_258 0.48 -0.3 249,033 + HP15_258 0.48 -0.7 249,045 + HP15_258 0.49 -0.5 249,065 + HP15_258 0.50 -0.1
Or see this region's nucleotide sequence