Experiment: m.b. Dimethyl Sulfoxide 7.5 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2413 and HP15_2414 overlap by 1 nucleotides HP15_2414 and HP15_2415 are separated by 43 nucleotides
HP15_2413: HP15_2413 - conserved hypothetical protein, secreted, at 2,547,991 to 2,549,085
_2413
HP15_2414: HP15_2414 - protein containing uncharacterized protein family UPF0066 domains, at 2,549,085 to 2,549,828
_2414
HP15_2415: HP15_2415 - sensory box sensor histidine kinase/response regulator, at 2,549,872 to 2,552,223
_2415
Position (kb)
2549
2550 Strain fitness (log2 ratio)
-2
-1
0
1 at 2548.167 kb on + strand, within HP15_2413 at 2548.273 kb on + strand, within HP15_2413 at 2548.282 kb on - strand, within HP15_2413 at 2548.292 kb on + strand, within HP15_2413 at 2548.319 kb on - strand, within HP15_2413 at 2548.481 kb on - strand, within HP15_2413 at 2548.544 kb on - strand, within HP15_2413 at 2548.585 kb on + strand, within HP15_2413 at 2548.591 kb on + strand, within HP15_2413 at 2548.722 kb on - strand, within HP15_2413 at 2548.785 kb on - strand, within HP15_2413 at 2548.797 kb on - strand, within HP15_2413 at 2548.898 kb on - strand, within HP15_2413 at 2549.009 kb on + strand at 2549.017 kb on - strand at 2549.185 kb on + strand, within HP15_2414 at 2549.415 kb on - strand, within HP15_2414 at 2549.556 kb on + strand, within HP15_2414 at 2549.564 kb on - strand, within HP15_2414 at 2549.672 kb on + strand, within HP15_2414 at 2549.748 kb on + strand, within HP15_2414 at 2549.906 kb on - strand at 2549.936 kb on + strand at 2550.054 kb on - strand at 2550.177 kb on - strand, within HP15_2415 at 2550.306 kb on - strand, within HP15_2415 at 2550.316 kb on - strand, within HP15_2415 at 2550.339 kb on - strand, within HP15_2415 at 2550.702 kb on - strand, within HP15_2415 at 2550.702 kb on - strand, within HP15_2415 at 2550.742 kb on - strand, within HP15_2415
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Dimethyl Sulfoxide 7.5 vol% remove 2,548,167 + HP15_2413 0.16 +0.7 2,548,273 + HP15_2413 0.26 +0.5 2,548,282 - HP15_2413 0.27 +0.4 2,548,292 + HP15_2413 0.27 +0.2 2,548,319 - HP15_2413 0.30 -0.3 2,548,481 - HP15_2413 0.45 +0.1 2,548,544 - HP15_2413 0.51 +0.2 2,548,585 + HP15_2413 0.54 -0.2 2,548,591 + HP15_2413 0.55 +0.6 2,548,722 - HP15_2413 0.67 -0.1 2,548,785 - HP15_2413 0.73 -0.2 2,548,797 - HP15_2413 0.74 -0.6 2,548,898 - HP15_2413 0.83 -0.3 2,549,009 + -0.5 2,549,017 - +0.9 2,549,185 + HP15_2414 0.13 +0.3 2,549,415 - HP15_2414 0.44 +0.5 2,549,556 + HP15_2414 0.63 +0.9 2,549,564 - HP15_2414 0.64 +0.8 2,549,672 + HP15_2414 0.79 +0.4 2,549,748 + HP15_2414 0.89 +0.9 2,549,906 - -1.3 2,549,936 + +0.0 2,550,054 - -0.6 2,550,177 - HP15_2415 0.13 -0.9 2,550,306 - HP15_2415 0.18 -0.1 2,550,316 - HP15_2415 0.19 -0.4 2,550,339 - HP15_2415 0.20 +0.5 2,550,702 - HP15_2415 0.35 +0.0 2,550,702 - HP15_2415 0.35 -2.7 2,550,742 - HP15_2415 0.37 -0.4
Or see this region's nucleotide sequence