Experiment: m.b. Dimethyl Sulfoxide 7.5 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_104 and HP15_105 are separated by 186 nucleotides HP15_105 and HP15_106 are separated by 432 nucleotides HP15_106 and HP15_107 are separated by 271 nucleotides HP15_107 and HP15_108 overlap by 2 nucleotides
HP15_104: HP15_104 - integral membrane sensor signal transduction histidine kinase, at 107,608 to 108,921
_104
HP15_105: HP15_105 - conserved hypothetical protein, at 109,108 to 109,308
_105
HP15_106: HP15_106 - conserved hypothetical protein, secreted, at 109,741 to 110,991
_106
HP15_107: HP15_107 - hypothetical protein, at 111,263 to 111,523
_107
HP15_108: HP15_108 - outer membrane efflux protein, at 111,522 to 112,619
_108
Position (kb)
109
110
111 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 108.778 kb on - strand, within HP15_104 at 108.785 kb on + strand, within HP15_104 at 108.839 kb on + strand at 108.916 kb on + strand at 108.925 kb on - strand at 108.985 kb on + strand at 108.993 kb on - strand at 109.328 kb on + strand at 109.328 kb on + strand at 109.351 kb on - strand at 109.374 kb on - strand at 109.412 kb on + strand at 109.420 kb on - strand at 109.496 kb on + strand at 109.515 kb on + strand at 109.607 kb on - strand at 109.607 kb on - strand at 109.635 kb on + strand at 109.648 kb on + strand at 109.756 kb on - strand at 109.778 kb on + strand at 109.792 kb on + strand at 109.814 kb on - strand at 109.816 kb on + strand at 109.851 kb on + strand at 109.976 kb on + strand, within HP15_106 at 109.981 kb on + strand, within HP15_106 at 109.994 kb on - strand, within HP15_106 at 110.014 kb on - strand, within HP15_106 at 110.022 kb on - strand, within HP15_106 at 110.038 kb on + strand, within HP15_106 at 110.038 kb on + strand, within HP15_106 at 110.064 kb on - strand, within HP15_106 at 110.098 kb on - strand, within HP15_106 at 110.098 kb on - strand, within HP15_106 at 110.116 kb on + strand, within HP15_106 at 110.199 kb on + strand, within HP15_106 at 110.202 kb on - strand, within HP15_106 at 110.207 kb on - strand, within HP15_106 at 110.209 kb on - strand, within HP15_106 at 110.209 kb on - strand, within HP15_106 at 110.230 kb on + strand, within HP15_106 at 110.238 kb on - strand, within HP15_106 at 110.238 kb on - strand, within HP15_106 at 110.256 kb on - strand, within HP15_106 at 110.264 kb on - strand, within HP15_106 at 110.276 kb on + strand, within HP15_106 at 110.358 kb on + strand, within HP15_106 at 110.402 kb on - strand, within HP15_106 at 110.409 kb on - strand, within HP15_106 at 110.424 kb on - strand, within HP15_106 at 110.425 kb on - strand, within HP15_106 at 110.451 kb on + strand, within HP15_106 at 110.459 kb on - strand, within HP15_106 at 110.462 kb on + strand, within HP15_106 at 110.484 kb on - strand, within HP15_106 at 110.484 kb on - strand, within HP15_106 at 110.518 kb on - strand, within HP15_106 at 110.621 kb on + strand, within HP15_106 at 110.665 kb on + strand, within HP15_106 at 110.732 kb on + strand, within HP15_106 at 110.732 kb on + strand, within HP15_106 at 110.740 kb on - strand, within HP15_106 at 110.779 kb on + strand, within HP15_106 at 110.779 kb on + strand, within HP15_106 at 110.787 kb on - strand, within HP15_106 at 110.804 kb on + strand, within HP15_106 at 110.819 kb on - strand, within HP15_106 at 110.842 kb on + strand, within HP15_106 at 110.850 kb on - strand, within HP15_106 at 110.884 kb on + strand at 110.894 kb on + strand at 110.902 kb on - strand at 110.910 kb on + strand at 110.918 kb on - strand at 110.918 kb on - strand at 110.979 kb on + strand at 110.987 kb on - strand at 111.037 kb on + strand at 111.037 kb on + strand at 111.037 kb on + strand at 111.040 kb on - strand at 111.045 kb on - strand at 111.045 kb on - strand at 111.063 kb on - strand at 111.121 kb on - strand at 111.132 kb on - strand at 111.146 kb on - strand at 111.251 kb on - strand at 111.314 kb on - strand, within HP15_107 at 111.338 kb on - strand, within HP15_107 at 111.399 kb on - strand, within HP15_107 at 111.436 kb on - strand, within HP15_107 at 111.498 kb on + strand at 111.508 kb on + strand at 111.558 kb on + strand at 111.568 kb on + strand at 111.574 kb on + strand at 111.576 kb on - strand at 111.576 kb on - strand at 111.577 kb on - strand at 111.598 kb on + strand at 111.611 kb on - strand at 111.641 kb on - strand, within HP15_108 at 111.683 kb on + strand, within HP15_108 at 111.698 kb on - strand, within HP15_108 at 111.706 kb on + strand, within HP15_108 at 111.825 kb on - strand, within HP15_108 at 111.831 kb on - strand, within HP15_108 at 111.838 kb on + strand, within HP15_108 at 111.862 kb on - strand, within HP15_108 at 111.878 kb on + strand, within HP15_108 at 111.911 kb on - strand, within HP15_108 at 111.935 kb on + strand, within HP15_108 at 111.985 kb on + strand, within HP15_108
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Dimethyl Sulfoxide 7.5 vol% remove 108,778 - HP15_104 0.89 +0.3 108,785 + HP15_104 0.90 +0.8 108,839 + +0.6 108,916 + +1.3 108,925 - +0.8 108,985 + -0.0 108,993 - +1.1 109,328 + +0.7 109,328 + +1.3 109,351 - +0.1 109,374 - -0.9 109,412 + +0.4 109,420 - -0.4 109,496 + +0.1 109,515 + +1.7 109,607 - +0.3 109,607 - +0.5 109,635 + -0.5 109,648 + -0.1 109,756 - +0.6 109,778 + +0.7 109,792 + -0.3 109,814 - +0.4 109,816 + +0.2 109,851 + +1.2 109,976 + HP15_106 0.19 +0.3 109,981 + HP15_106 0.19 +1.1 109,994 - HP15_106 0.20 +0.3 110,014 - HP15_106 0.22 -0.1 110,022 - HP15_106 0.22 +0.6 110,038 + HP15_106 0.24 +0.5 110,038 + HP15_106 0.24 +1.0 110,064 - HP15_106 0.26 +0.4 110,098 - HP15_106 0.29 -0.2 110,098 - HP15_106 0.29 -0.4 110,116 + HP15_106 0.30 +0.1 110,199 + HP15_106 0.37 +0.2 110,202 - HP15_106 0.37 +0.1 110,207 - HP15_106 0.37 -0.3 110,209 - HP15_106 0.37 +0.2 110,209 - HP15_106 0.37 -0.6 110,230 + HP15_106 0.39 +0.7 110,238 - HP15_106 0.40 +0.3 110,238 - HP15_106 0.40 +0.4 110,256 - HP15_106 0.41 +0.1 110,264 - HP15_106 0.42 +0.4 110,276 + HP15_106 0.43 +1.3 110,358 + HP15_106 0.49 +0.6 110,402 - HP15_106 0.53 -0.9 110,409 - HP15_106 0.53 +0.9 110,424 - HP15_106 0.55 -0.6 110,425 - HP15_106 0.55 +0.9 110,451 + HP15_106 0.57 -0.2 110,459 - HP15_106 0.57 +0.5 110,462 + HP15_106 0.58 -0.0 110,484 - HP15_106 0.59 -0.8 110,484 - HP15_106 0.59 +0.9 110,518 - HP15_106 0.62 +0.2 110,621 + HP15_106 0.70 -0.6 110,665 + HP15_106 0.74 -0.1 110,732 + HP15_106 0.79 +0.4 110,732 + HP15_106 0.79 -0.4 110,740 - HP15_106 0.80 +0.2 110,779 + HP15_106 0.83 -0.2 110,779 + HP15_106 0.83 +0.4 110,787 - HP15_106 0.84 +0.5 110,804 + HP15_106 0.85 +0.3 110,819 - HP15_106 0.86 +0.5 110,842 + HP15_106 0.88 -0.1 110,850 - HP15_106 0.89 +0.3 110,884 + -0.3 110,894 + -0.5 110,902 - +0.2 110,910 + -0.3 110,918 - -0.6 110,918 - +0.6 110,979 + -0.3 110,987 - +0.4 111,037 + +0.3 111,037 + -0.5 111,037 + +0.3 111,040 - -0.1 111,045 - -0.6 111,045 - -0.0 111,063 - +0.5 111,121 - -0.2 111,132 - +1.2 111,146 - -0.7 111,251 - +1.7 111,314 - HP15_107 0.20 +0.1 111,338 - HP15_107 0.29 +0.7 111,399 - HP15_107 0.52 -0.5 111,436 - HP15_107 0.66 +0.7 111,498 + -0.0 111,508 + +0.2 111,558 + -0.3 111,568 + -0.3 111,574 + +0.8 111,576 - +0.7 111,576 - -2.2 111,577 - -0.6 111,598 + +0.7 111,611 - +0.2 111,641 - HP15_108 0.11 +0.3 111,683 + HP15_108 0.15 +0.2 111,698 - HP15_108 0.16 +0.0 111,706 + HP15_108 0.17 +1.8 111,825 - HP15_108 0.28 +1.0 111,831 - HP15_108 0.28 +1.2 111,838 + HP15_108 0.29 -0.5 111,862 - HP15_108 0.31 -0.1 111,878 + HP15_108 0.32 +0.0 111,911 - HP15_108 0.35 -0.3 111,935 + HP15_108 0.38 +0.5 111,985 + HP15_108 0.42 -0.5
Or see this region's nucleotide sequence