Strain Fitness in Dechlorosoma suillum PS around Dsui_3440

Experiment: R2A with sodium pyruvate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_3439 and Dsui_3440 are separated by 127 nucleotidesDsui_3440 and Dsui_3441 overlap by 4 nucleotides Dsui_3439: Dsui_3439 - methyl-accepting chemotaxis protein, at 3,694,316 to 3,695,965 _3439 Dsui_3440: Dsui_3440 - Protein of unknown function (DUF2892), at 3,696,093 to 3,696,302 _3440 Dsui_3441: Dsui_3441 - cation/multidrug efflux pump, at 3,696,299 to 3,699,550 _3441 Position (kb) 3696 3697Strain fitness (log2 ratio) -1 0 1 2at 3695.094 kb on - strand, within Dsui_3439at 3695.119 kb on + strandat 3695.160 kb on - strand, within Dsui_3439at 3695.221 kb on + strand, within Dsui_3439at 3695.233 kb on + strand, within Dsui_3439at 3695.325 kb on - strand, within Dsui_3439at 3695.611 kb on + strand, within Dsui_3439at 3695.660 kb on + strand, within Dsui_3439at 3695.683 kb on - strand, within Dsui_3439at 3695.684 kb on - strand, within Dsui_3439at 3695.730 kb on + strand, within Dsui_3439at 3695.820 kb on - strandat 3695.925 kb on + strandat 3696.036 kb on - strandat 3696.115 kb on + strandat 3696.167 kb on - strand, within Dsui_3440at 3696.255 kb on - strand, within Dsui_3440at 3696.298 kb on - strandat 3696.313 kb on + strandat 3696.529 kb on - strandat 3696.559 kb on + strandat 3696.612 kb on - strandat 3696.679 kb on + strandat 3696.716 kb on - strand, within Dsui_3441at 3696.751 kb on - strand, within Dsui_3441at 3696.839 kb on - strand, within Dsui_3441at 3696.885 kb on + strand, within Dsui_3441at 3696.988 kb on - strandat 3697.092 kb on - strand, within Dsui_3441

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with sodium pyruvate
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3,695,094 - Dsui_3439 0.47 +1.0
3,695,119 + +2.4
3,695,160 - Dsui_3439 0.51 -0.6
3,695,221 + Dsui_3439 0.55 +1.9
3,695,233 + Dsui_3439 0.56 -0.4
3,695,325 - Dsui_3439 0.61 +0.2
3,695,611 + Dsui_3439 0.78 -0.4
3,695,660 + Dsui_3439 0.81 -0.5
3,695,683 - Dsui_3439 0.83 +1.2
3,695,684 - Dsui_3439 0.83 +0.3
3,695,730 + Dsui_3439 0.86 +0.2
3,695,820 - -0.3
3,695,925 + +0.4
3,696,036 - +1.0
3,696,115 + +1.4
3,696,167 - Dsui_3440 0.35 +0.6
3,696,255 - Dsui_3440 0.77 -1.4
3,696,298 - -0.6
3,696,313 + +0.8
3,696,529 - -0.9
3,696,559 + -0.2
3,696,612 - +1.4
3,696,679 + +1.4
3,696,716 - Dsui_3441 0.13 -0.8
3,696,751 - Dsui_3441 0.14 -0.4
3,696,839 - Dsui_3441 0.17 -0.6
3,696,885 + Dsui_3441 0.18 -0.7
3,696,988 - -0.4
3,697,092 - Dsui_3441 0.24 +0.2

Or see this region's nucleotide sequence