Strain Fitness in Dechlorosoma suillum PS around Dsui_3197

Experiment: R2A with sodium pyruvate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_3196 and Dsui_3197 are separated by 215 nucleotidesDsui_3197 and Dsui_3198 are separated by 93 nucleotides Dsui_3196: Dsui_3196 - FimV N-terminal domain protein, at 3,429,809 to 3,432,817 _3196 Dsui_3197: Dsui_3197 - aspartate-semialdehyde dehydrogenase, gamma-proteobacterial, at 3,433,033 to 3,434,166 _3197 Dsui_3198: Dsui_3198 - 3-isopropylmalate dehydrogenase, at 3,434,260 to 3,435,324 _3198 Position (kb) 3433 3434 3435Strain fitness (log2 ratio) -2 -1 0 1 2at 3432.041 kb on - strand, within Dsui_3196at 3432.119 kb on + strand, within Dsui_3196at 3432.138 kb on + strand, within Dsui_3196at 3432.143 kb on + strand, within Dsui_3196at 3432.171 kb on - strand, within Dsui_3196at 3432.177 kb on + strandat 3432.441 kb on + strand, within Dsui_3196at 3432.442 kb on - strand, within Dsui_3196at 3432.525 kb on + strandat 3432.538 kb on - strandat 3432.538 kb on - strandat 3432.574 kb on + strandat 3432.608 kb on + strandat 3432.657 kb on + strandat 3432.670 kb on - strandat 3432.766 kb on - strandat 3432.792 kb on - strandat 3432.831 kb on + strandat 3432.834 kb on + strandat 3432.885 kb on + strandat 3432.885 kb on + strandat 3432.885 kb on + strandat 3432.893 kb on - strandat 3432.893 kb on - strandat 3432.893 kb on - strandat 3432.893 kb on - strandat 3432.893 kb on - strandat 3432.893 kb on - strandat 3432.893 kb on - strandat 3432.893 kb on - strandat 3434.206 kb on - strandat 3434.222 kb on + strandat 3434.223 kb on + strandat 3434.231 kb on - strandat 3434.258 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with sodium pyruvate
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3,432,041 - Dsui_3196 0.74 -1.4
3,432,119 + Dsui_3196 0.77 -0.8
3,432,138 + Dsui_3196 0.77 +0.2
3,432,143 + Dsui_3196 0.78 -0.9
3,432,171 - Dsui_3196 0.78 -0.5
3,432,177 + +1.7
3,432,441 + Dsui_3196 0.87 -0.6
3,432,442 - Dsui_3196 0.88 -2.2
3,432,525 + -0.5
3,432,538 - +0.2
3,432,538 - -1.8
3,432,574 + -1.4
3,432,608 + +1.9
3,432,657 + +0.4
3,432,670 - -0.8
3,432,766 - -0.5
3,432,792 - +0.1
3,432,831 + +0.7
3,432,834 + -1.5
3,432,885 + -0.1
3,432,885 + -0.3
3,432,885 + -0.2
3,432,893 - -0.3
3,432,893 - -0.0
3,432,893 - -0.1
3,432,893 - -0.9
3,432,893 - +0.8
3,432,893 - +0.0
3,432,893 - -0.4
3,432,893 - -0.0
3,434,206 - -0.1
3,434,222 + -0.7
3,434,223 + -1.0
3,434,231 - -1.5
3,434,258 + +0.2

Or see this region's nucleotide sequence