Strain Fitness in Dechlorosoma suillum PS around Dsui_3097

Experiment: R2A with sodium pyruvate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_3096 and Dsui_3097 are separated by 196 nucleotidesDsui_3097 and Dsui_3098 overlap by 4 nucleotidesDsui_3098 and Dsui_3099 overlap by 4 nucleotides Dsui_3096: Dsui_3096 - NADH dehydrogenase, FAD-containing subunit, at 3,313,813 to 3,315,132 _3096 Dsui_3097: Dsui_3097 - O-6-methylguanine DNA methyltransferase, at 3,315,329 to 3,316,552 _3097 Dsui_3098: Dsui_3098 - alkylated DNA repair protein, at 3,316,549 to 3,317,211 _3098 Dsui_3099: Dsui_3099 - 3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase, at 3,317,208 to 3,318,188 _3099 Position (kb) 3315 3316 3317Strain fitness (log2 ratio) -2 -1 0 1 2at 3314.357 kb on + strandat 3314.415 kb on - strandat 3314.428 kb on - strandat 3314.502 kb on - strandat 3314.519 kb on - strand, within Dsui_3096at 3314.520 kb on - strand, within Dsui_3096at 3314.533 kb on + strandat 3314.652 kb on - strand, within Dsui_3096at 3314.658 kb on - strand, within Dsui_3096at 3314.720 kb on + strandat 3314.768 kb on + strand, within Dsui_3096at 3314.862 kb on - strand, within Dsui_3096at 3315.506 kb on + strand, within Dsui_3097at 3315.531 kb on + strandat 3316.342 kb on + strand, within Dsui_3097at 3316.342 kb on + strand, within Dsui_3097at 3316.350 kb on - strand, within Dsui_3097at 3316.350 kb on - strand, within Dsui_3097at 3316.350 kb on - strandat 3316.350 kb on - strandat 3316.529 kb on + strandat 3316.534 kb on + strandat 3316.534 kb on + strandat 3316.542 kb on - strandat 3316.554 kb on - strandat 3316.601 kb on - strandat 3316.726 kb on + strandat 3316.847 kb on - strand, within Dsui_3098at 3317.183 kb on + strandat 3317.362 kb on + strandat 3317.417 kb on + strandat 3317.425 kb on - strandat 3317.429 kb on + strand, within Dsui_3099at 3317.443 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with sodium pyruvate
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3,314,357 + +2.3
3,314,415 - +0.3
3,314,428 - +0.7
3,314,502 - +0.3
3,314,519 - Dsui_3096 0.53 -1.1
3,314,520 - Dsui_3096 0.54 +1.7
3,314,533 + -0.5
3,314,652 - Dsui_3096 0.64 -0.4
3,314,658 - Dsui_3096 0.64 -0.4
3,314,720 + +2.3
3,314,768 + Dsui_3096 0.72 -0.5
3,314,862 - Dsui_3096 0.79 +0.6
3,315,506 + Dsui_3097 0.14 -0.7
3,315,531 + +2.3
3,316,342 + Dsui_3097 0.83 +1.0
3,316,342 + Dsui_3097 0.83 -0.5
3,316,350 - Dsui_3097 0.83 -1.5
3,316,350 - Dsui_3097 0.83 -0.7
3,316,350 - +1.3
3,316,350 - +1.3
3,316,529 + -1.9
3,316,534 + -0.7
3,316,534 + +0.6
3,316,542 - +1.3
3,316,554 - +1.9
3,316,601 - +1.7
3,316,726 + -0.2
3,316,847 - Dsui_3098 0.45 -0.3
3,317,183 + +2.3
3,317,362 + +1.3
3,317,417 + +1.7
3,317,425 - +2.3
3,317,429 + Dsui_3099 0.23 -0.9
3,317,443 + +1.3

Or see this region's nucleotide sequence