Experiment: R2A with sodium pyruvate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2993 and Dsui_2994 are separated by 11 nucleotides Dsui_2994 and Dsui_2995 are separated by 126 nucleotides Dsui_2995 and Dsui_2996 are separated by 144 nucleotides
Dsui_2993: Dsui_2993 - hypothetical protein, at 3,202,533 to 3,203,900
_2993
Dsui_2994: Dsui_2994 - fructose-2,6-bisphosphatase, at 3,203,912 to 3,204,613
_2994
Dsui_2995: Dsui_2995 - hypothetical protein, at 3,204,740 to 3,205,330
_2995
Dsui_2996: Dsui_2996 - type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB, at 3,205,475 to 3,207,289
_2996
Position (kb)
3204
3205
3206 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3203.960 kb on - strand at 3203.960 kb on - strand at 3204.154 kb on - strand, within Dsui_2994 at 3204.172 kb on - strand, within Dsui_2994 at 3204.193 kb on - strand at 3204.605 kb on - strand at 3204.639 kb on - strand at 3204.769 kb on + strand at 3204.797 kb on + strand at 3204.979 kb on - strand, within Dsui_2995 at 3204.988 kb on - strand, within Dsui_2995 at 3205.071 kb on - strand, within Dsui_2995 at 3205.081 kb on - strand, within Dsui_2995 at 3205.086 kb on - strand, within Dsui_2995 at 3205.228 kb on + strand at 3205.236 kb on - strand, within Dsui_2995 at 3205.302 kb on + strand at 3205.307 kb on + strand at 3205.384 kb on + strand at 3205.521 kb on - strand at 3205.677 kb on - strand, within Dsui_2996 at 3205.702 kb on + strand at 3205.727 kb on + strand, within Dsui_2996 at 3205.732 kb on + strand, within Dsui_2996 at 3205.735 kb on - strand, within Dsui_2996 at 3205.767 kb on - strand, within Dsui_2996 at 3205.767 kb on - strand, within Dsui_2996 at 3205.821 kb on + strand, within Dsui_2996 at 3205.830 kb on - strand, within Dsui_2996 at 3205.994 kb on + strand, within Dsui_2996 at 3206.085 kb on - strand, within Dsui_2996 at 3206.124 kb on - strand, within Dsui_2996 at 3206.153 kb on - strand, within Dsui_2996 at 3206.256 kb on + strand, within Dsui_2996
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with sodium pyruvate remove 3,203,960 - +1.3 3,203,960 - +0.2 3,204,154 - Dsui_2994 0.34 +0.7 3,204,172 - Dsui_2994 0.37 +0.5 3,204,193 - +0.0 3,204,605 - +1.3 3,204,639 - +1.7 3,204,769 + +1.7 3,204,797 + -0.7 3,204,979 - Dsui_2995 0.40 -0.8 3,204,988 - Dsui_2995 0.42 +0.2 3,205,071 - Dsui_2995 0.56 +1.7 3,205,081 - Dsui_2995 0.58 +0.5 3,205,086 - Dsui_2995 0.59 -0.8 3,205,228 + +1.7 3,205,236 - Dsui_2995 0.84 +0.1 3,205,302 + +0.0 3,205,307 + +0.3 3,205,384 + -0.3 3,205,521 - -0.7 3,205,677 - Dsui_2996 0.11 -0.3 3,205,702 + +2.3 3,205,727 + Dsui_2996 0.14 -1.1 3,205,732 + Dsui_2996 0.14 -1.0 3,205,735 - Dsui_2996 0.14 -0.6 3,205,767 - Dsui_2996 0.16 -1.1 3,205,767 - Dsui_2996 0.16 -0.2 3,205,821 + Dsui_2996 0.19 -0.3 3,205,830 - Dsui_2996 0.20 +1.2 3,205,994 + Dsui_2996 0.29 -1.8 3,206,085 - Dsui_2996 0.34 -0.1 3,206,124 - Dsui_2996 0.36 +0.1 3,206,153 - Dsui_2996 0.37 +0.0 3,206,256 + Dsui_2996 0.43 -1.6
Or see this region's nucleotide sequence