Strain Fitness in Dechlorosoma suillum PS around Dsui_2956

Experiment: R2A with sodium pyruvate

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDsui_2955 and Dsui_2956 overlap by 4 nucleotidesDsui_2956 and Dsui_2957 overlap by 7 nucleotidesDsui_2957 and Dsui_2958 overlap by 4 nucleotides Dsui_2955: Dsui_2955 - cobalamin biosynthesis protein CbiM, at 3,164,634 to 3,165,311 _2955 Dsui_2956: Dsui_2956 - ABC-type cobalt transport system, periplasmic component, at 3,165,308 to 3,165,679 _2956 Dsui_2957: Dsui_2957 - cobalt ABC transporter, permease protein CbiQ, at 3,165,673 to 3,166,404 _2957 Dsui_2958: Dsui_2958 - cobalt transport protein ATP-binding subunit, at 3,166,401 to 3,167,240 _2958 Position (kb) 3165 3166Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3164.318 kb on - strandat 3164.330 kb on - strandat 3164.362 kb on + strandat 3164.362 kb on + strandat 3164.370 kb on - strandat 3164.419 kb on - strandat 3164.454 kb on + strandat 3164.625 kb on - strandat 3164.639 kb on + strandat 3164.790 kb on - strandat 3165.119 kb on + strand, within Dsui_2955at 3165.119 kb on + strand, within Dsui_2955at 3165.240 kb on + strand, within Dsui_2955at 3165.259 kb on + strandat 3165.367 kb on - strand, within Dsui_2956at 3165.575 kb on + strand, within Dsui_2956at 3165.650 kb on + strandat 3166.105 kb on - strand, within Dsui_2957at 3166.105 kb on - strandat 3166.154 kb on - strandat 3166.479 kb on - strandat 3166.534 kb on + strand, within Dsui_2958at 3166.563 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction R2A with sodium pyruvate
remove
3,164,318 - -1.6
3,164,330 - +1.3
3,164,362 + -0.0
3,164,362 + -0.5
3,164,370 - +0.2
3,164,419 - +0.0
3,164,454 + +1.0
3,164,625 - +1.0
3,164,639 + -0.2
3,164,790 - +2.3
3,165,119 + Dsui_2955 0.72 -2.4
3,165,119 + Dsui_2955 0.72 +0.2
3,165,240 + Dsui_2955 0.89 -0.8
3,165,259 + +2.3
3,165,367 - Dsui_2956 0.16 -0.5
3,165,575 + Dsui_2956 0.72 -0.7
3,165,650 + -0.5
3,166,105 - Dsui_2957 0.59 -0.2
3,166,105 - +0.3
3,166,154 - +3.3
3,166,479 - +2.3
3,166,534 + Dsui_2958 0.16 +0.2
3,166,563 - +0.3

Or see this region's nucleotide sequence