Experiment: R2A with sodium pyruvate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2944 and Dsui_2945 are separated by 313 nucleotides Dsui_2945 and Dsui_2946 overlap by 1 nucleotides
Dsui_2944: Dsui_2944 - diguanylate cyclase (GGDEF) domain-containing protein, at 3,149,972 to 3,151,684
_2944
Dsui_2945: Dsui_2945 - hypothetical protein, at 3,151,998 to 3,152,486
_2945
Dsui_2946: Dsui_2946 - DNA/RNA helicase, superfamily II, at 3,152,486 to 3,153,916
_2946
Position (kb)
3151
3152
3153 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3151.159 kb on + strand, within Dsui_2944 at 3151.159 kb on + strand, within Dsui_2944 at 3151.160 kb on + strand, within Dsui_2944 at 3151.160 kb on + strand, within Dsui_2944 at 3151.369 kb on - strand, within Dsui_2944 at 3151.557 kb on + strand at 3151.617 kb on - strand at 3151.629 kb on - strand at 3151.786 kb on - strand at 3151.811 kb on + strand at 3151.870 kb on - strand at 3151.907 kb on - strand at 3151.950 kb on - strand at 3151.955 kb on + strand at 3151.963 kb on + strand at 3151.975 kb on + strand at 3151.983 kb on - strand at 3152.125 kb on + strand, within Dsui_2945 at 3152.174 kb on - strand at 3152.347 kb on - strand at 3152.353 kb on + strand, within Dsui_2945 at 3152.372 kb on + strand, within Dsui_2945 at 3152.407 kb on + strand, within Dsui_2945 at 3152.408 kb on + strand, within Dsui_2945 at 3152.408 kb on + strand, within Dsui_2945 at 3152.437 kb on - strand at 3152.658 kb on + strand, within Dsui_2946 at 3152.712 kb on + strand, within Dsui_2946 at 3152.712 kb on + strand, within Dsui_2946 at 3152.730 kb on - strand at 3152.767 kb on + strand, within Dsui_2946 at 3152.778 kb on + strand, within Dsui_2946 at 3152.810 kb on - strand at 3152.961 kb on + strand, within Dsui_2946 at 3152.965 kb on + strand, within Dsui_2946 at 3152.993 kb on - strand at 3153.070 kb on + strand, within Dsui_2946 at 3153.308 kb on - strand, within Dsui_2946 at 3153.308 kb on - strand at 3153.308 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with sodium pyruvate remove 3,151,159 + Dsui_2944 0.69 -0.3 3,151,159 + Dsui_2944 0.69 -0.9 3,151,160 + Dsui_2944 0.69 +0.5 3,151,160 + Dsui_2944 0.69 -0.4 3,151,369 - Dsui_2944 0.82 +0.0 3,151,557 + -0.9 3,151,617 - +0.3 3,151,629 - +0.5 3,151,786 - +1.6 3,151,811 + +0.8 3,151,870 - +0.3 3,151,907 - +0.3 3,151,950 - +0.5 3,151,955 + -0.3 3,151,963 + +0.0 3,151,975 + +0.5 3,151,983 - +2.3 3,152,125 + Dsui_2945 0.26 -0.8 3,152,174 - +2.3 3,152,347 - +1.3 3,152,353 + Dsui_2945 0.73 -2.2 3,152,372 + Dsui_2945 0.76 +0.9 3,152,407 + Dsui_2945 0.84 -0.9 3,152,408 + Dsui_2945 0.84 -0.5 3,152,408 + Dsui_2945 0.84 -0.8 3,152,437 - +0.8 3,152,658 + Dsui_2946 0.12 -0.2 3,152,712 + Dsui_2946 0.16 +0.0 3,152,712 + Dsui_2946 0.16 -0.5 3,152,730 - +0.3 3,152,767 + Dsui_2946 0.20 -0.2 3,152,778 + Dsui_2946 0.20 -0.0 3,152,810 - -0.5 3,152,961 + Dsui_2946 0.33 +0.3 3,152,965 + Dsui_2946 0.33 -1.4 3,152,993 - +1.3 3,153,070 + Dsui_2946 0.41 +0.5 3,153,308 - Dsui_2946 0.57 +0.5 3,153,308 - -0.5 3,153,308 - +1.3
Or see this region's nucleotide sequence