Strain Fitness in Dechlorosoma suillum PS around Dsui_2945

Experiment: R2A with sodium pyruvate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2944 and Dsui_2945 are separated by 313 nucleotidesDsui_2945 and Dsui_2946 overlap by 1 nucleotides Dsui_2944: Dsui_2944 - diguanylate cyclase (GGDEF) domain-containing protein, at 3,149,972 to 3,151,684 _2944 Dsui_2945: Dsui_2945 - hypothetical protein, at 3,151,998 to 3,152,486 _2945 Dsui_2946: Dsui_2946 - DNA/RNA helicase, superfamily II, at 3,152,486 to 3,153,916 _2946 Position (kb) 3151 3152 3153Strain fitness (log2 ratio) -2 -1 0 1 2at 3151.159 kb on + strand, within Dsui_2944at 3151.159 kb on + strand, within Dsui_2944at 3151.160 kb on + strand, within Dsui_2944at 3151.160 kb on + strand, within Dsui_2944at 3151.369 kb on - strand, within Dsui_2944at 3151.557 kb on + strandat 3151.617 kb on - strandat 3151.629 kb on - strandat 3151.786 kb on - strandat 3151.811 kb on + strandat 3151.870 kb on - strandat 3151.907 kb on - strandat 3151.950 kb on - strandat 3151.955 kb on + strandat 3151.963 kb on + strandat 3151.975 kb on + strandat 3151.983 kb on - strandat 3152.125 kb on + strand, within Dsui_2945at 3152.174 kb on - strandat 3152.347 kb on - strandat 3152.353 kb on + strand, within Dsui_2945at 3152.372 kb on + strand, within Dsui_2945at 3152.407 kb on + strand, within Dsui_2945at 3152.408 kb on + strand, within Dsui_2945at 3152.408 kb on + strand, within Dsui_2945at 3152.437 kb on - strandat 3152.658 kb on + strand, within Dsui_2946at 3152.712 kb on + strand, within Dsui_2946at 3152.712 kb on + strand, within Dsui_2946at 3152.730 kb on - strandat 3152.767 kb on + strand, within Dsui_2946at 3152.778 kb on + strand, within Dsui_2946at 3152.810 kb on - strandat 3152.961 kb on + strand, within Dsui_2946at 3152.965 kb on + strand, within Dsui_2946at 3152.993 kb on - strandat 3153.070 kb on + strand, within Dsui_2946at 3153.308 kb on - strand, within Dsui_2946at 3153.308 kb on - strandat 3153.308 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with sodium pyruvate
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3,151,159 + Dsui_2944 0.69 -0.3
3,151,159 + Dsui_2944 0.69 -0.9
3,151,160 + Dsui_2944 0.69 +0.5
3,151,160 + Dsui_2944 0.69 -0.4
3,151,369 - Dsui_2944 0.82 +0.0
3,151,557 + -0.9
3,151,617 - +0.3
3,151,629 - +0.5
3,151,786 - +1.6
3,151,811 + +0.8
3,151,870 - +0.3
3,151,907 - +0.3
3,151,950 - +0.5
3,151,955 + -0.3
3,151,963 + +0.0
3,151,975 + +0.5
3,151,983 - +2.3
3,152,125 + Dsui_2945 0.26 -0.8
3,152,174 - +2.3
3,152,347 - +1.3
3,152,353 + Dsui_2945 0.73 -2.2
3,152,372 + Dsui_2945 0.76 +0.9
3,152,407 + Dsui_2945 0.84 -0.9
3,152,408 + Dsui_2945 0.84 -0.5
3,152,408 + Dsui_2945 0.84 -0.8
3,152,437 - +0.8
3,152,658 + Dsui_2946 0.12 -0.2
3,152,712 + Dsui_2946 0.16 +0.0
3,152,712 + Dsui_2946 0.16 -0.5
3,152,730 - +0.3
3,152,767 + Dsui_2946 0.20 -0.2
3,152,778 + Dsui_2946 0.20 -0.0
3,152,810 - -0.5
3,152,961 + Dsui_2946 0.33 +0.3
3,152,965 + Dsui_2946 0.33 -1.4
3,152,993 - +1.3
3,153,070 + Dsui_2946 0.41 +0.5
3,153,308 - Dsui_2946 0.57 +0.5
3,153,308 - -0.5
3,153,308 - +1.3

Or see this region's nucleotide sequence