Strain Fitness in Dechlorosoma suillum PS around Dsui_2377

Experiment: R2A with sodium pyruvate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2375 and Dsui_2376 overlap by 4 nucleotidesDsui_2376 and Dsui_2377 are separated by 10 nucleotidesDsui_2377 and Dsui_2378 are separated by 76 nucleotidesDsui_2378 and Dsui_2379 are separated by 78 nucleotides Dsui_2375: Dsui_2375 - Fe-S protein assembly chaperone HscA, at 2,524,637 to 2,526,517 _2375 Dsui_2376: Dsui_2376 - ferredoxin, 2Fe-2S type, ISC system, at 2,526,514 to 2,526,855 _2376 Dsui_2377: Dsui_2377 - FeS assembly protein IscX, at 2,526,866 to 2,527,060 _2377 Dsui_2378: Dsui_2378 - hypothetical protein, at 2,527,137 to 2,527,454 _2378 Dsui_2379: Dsui_2379 - phosphoserine phosphatase SerB, at 2,527,533 to 2,528,375 _2379 Position (kb) 2526 2527 2528Strain fitness (log2 ratio) -1 0 1at 2526.849 kb on + strandat 2526.849 kb on + strandat 2526.849 kb on + strandat 2526.857 kb on - strandat 2526.976 kb on + strand, within Dsui_2377at 2527.003 kb on - strand, within Dsui_2377at 2527.068 kb on - strandat 2527.127 kb on + strandat 2527.146 kb on - strandat 2527.206 kb on + strand, within Dsui_2378at 2527.310 kb on - strand, within Dsui_2378at 2527.487 kb on + strandat 2527.509 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with sodium pyruvate
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2,526,849 + +0.3
2,526,849 + +0.3
2,526,849 + +0.5
2,526,857 - -0.4
2,526,976 + Dsui_2377 0.56 -0.5
2,527,003 - Dsui_2377 0.70 +0.9
2,527,068 - +0.3
2,527,127 + +0.1
2,527,146 - -1.5
2,527,206 + Dsui_2378 0.22 +0.9
2,527,310 - Dsui_2378 0.54 +0.2
2,527,487 + -0.1
2,527,509 - -0.2

Or see this region's nucleotide sequence