Experiment: R2A with sodium pyruvate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2353 and Dsui_2354 are separated by 121 nucleotides Dsui_2354 and Dsui_2355 are separated by 14 nucleotides Dsui_2355 and Dsui_2356 are separated by 50 nucleotides Dsui_2356 and Dsui_2357 are separated by 76 nucleotides
Dsui_2353: Dsui_2353 - transcriptional regulator, at 2,505,075 to 2,505,974
_2353
Dsui_2354: Dsui_2354 - hypothetical protein, at 2,506,096 to 2,506,941
_2354
Dsui_2355: Dsui_2355 - cytochrome B561, at 2,506,956 to 2,507,495
_2355
Dsui_2356: Dsui_2356 - hypothetical protein, at 2,507,546 to 2,508,124
_2356
Dsui_2357: Dsui_2357 - hypothetical protein, at 2,508,201 to 2,508,767
_2357
Position (kb)
2506
2507
2508 Strain fitness (log2 ratio)
-1
0
1
2
3 at 2505.994 kb on - strand at 2506.103 kb on + strand at 2506.244 kb on + strand at 2506.263 kb on + strand at 2506.280 kb on + strand at 2506.457 kb on - strand at 2506.485 kb on + strand at 2506.638 kb on - strand at 2506.735 kb on + strand at 2506.799 kb on - strand at 2506.861 kb on - strand at 2506.982 kb on - strand at 2506.995 kb on + strand at 2506.995 kb on + strand at 2507.014 kb on + strand, within Dsui_2355 at 2507.121 kb on - strand, within Dsui_2355 at 2507.282 kb on + strand, within Dsui_2355 at 2507.282 kb on + strand, within Dsui_2355 at 2507.318 kb on + strand, within Dsui_2355 at 2507.349 kb on + strand at 2507.363 kb on + strand, within Dsui_2355 at 2507.371 kb on - strand at 2507.489 kb on + strand at 2507.522 kb on + strand at 2507.528 kb on - strand at 2507.617 kb on + strand at 2507.861 kb on + strand at 2507.909 kb on + strand at 2508.118 kb on + strand at 2508.148 kb on + strand at 2508.159 kb on + strand at 2508.169 kb on + strand at 2508.292 kb on + strand at 2508.466 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with sodium pyruvate remove 2,505,994 - -0.4 2,506,103 + +1.4 2,506,244 + +1.4 2,506,263 + +0.8 2,506,280 + +2.4 2,506,457 - +1.4 2,506,485 + +2.4 2,506,638 - +0.1 2,506,735 + +0.8 2,506,799 - +2.4 2,506,861 - +1.4 2,506,982 - +1.4 2,506,995 + +0.6 2,506,995 + +0.5 2,507,014 + Dsui_2355 0.11 -1.2 2,507,121 - Dsui_2355 0.31 -0.4 2,507,282 + Dsui_2355 0.60 -0.5 2,507,282 + Dsui_2355 0.60 +1.3 2,507,318 + Dsui_2355 0.67 -0.4 2,507,349 + +1.4 2,507,363 + Dsui_2355 0.75 +0.3 2,507,371 - +1.4 2,507,489 + -1.0 2,507,522 + +0.8 2,507,528 - +0.8 2,507,617 + +3.0 2,507,861 + +2.0 2,507,909 + +0.1 2,508,118 + +2.4 2,508,148 + +2.4 2,508,159 + +2.4 2,508,169 + +0.8 2,508,292 + +0.4 2,508,466 - +0.8
Or see this region's nucleotide sequence