Strain Fitness in Dechlorosoma suillum PS around Dsui_2355

Experiment: R2A with sodium pyruvate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2353 and Dsui_2354 are separated by 121 nucleotidesDsui_2354 and Dsui_2355 are separated by 14 nucleotidesDsui_2355 and Dsui_2356 are separated by 50 nucleotidesDsui_2356 and Dsui_2357 are separated by 76 nucleotides Dsui_2353: Dsui_2353 - transcriptional regulator, at 2,505,075 to 2,505,974 _2353 Dsui_2354: Dsui_2354 - hypothetical protein, at 2,506,096 to 2,506,941 _2354 Dsui_2355: Dsui_2355 - cytochrome B561, at 2,506,956 to 2,507,495 _2355 Dsui_2356: Dsui_2356 - hypothetical protein, at 2,507,546 to 2,508,124 _2356 Dsui_2357: Dsui_2357 - hypothetical protein, at 2,508,201 to 2,508,767 _2357 Position (kb) 2506 2507 2508Strain fitness (log2 ratio) -1 0 1 2 3at 2505.994 kb on - strandat 2506.103 kb on + strandat 2506.244 kb on + strandat 2506.263 kb on + strandat 2506.280 kb on + strandat 2506.457 kb on - strandat 2506.485 kb on + strandat 2506.638 kb on - strandat 2506.735 kb on + strandat 2506.799 kb on - strandat 2506.861 kb on - strandat 2506.982 kb on - strandat 2506.995 kb on + strandat 2506.995 kb on + strandat 2507.014 kb on + strand, within Dsui_2355at 2507.121 kb on - strand, within Dsui_2355at 2507.282 kb on + strand, within Dsui_2355at 2507.282 kb on + strand, within Dsui_2355at 2507.318 kb on + strand, within Dsui_2355at 2507.349 kb on + strandat 2507.363 kb on + strand, within Dsui_2355at 2507.371 kb on - strandat 2507.489 kb on + strandat 2507.522 kb on + strandat 2507.528 kb on - strandat 2507.617 kb on + strandat 2507.861 kb on + strandat 2507.909 kb on + strandat 2508.118 kb on + strandat 2508.148 kb on + strandat 2508.159 kb on + strandat 2508.169 kb on + strandat 2508.292 kb on + strandat 2508.466 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with sodium pyruvate
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2,505,994 - -0.4
2,506,103 + +1.4
2,506,244 + +1.4
2,506,263 + +0.8
2,506,280 + +2.4
2,506,457 - +1.4
2,506,485 + +2.4
2,506,638 - +0.1
2,506,735 + +0.8
2,506,799 - +2.4
2,506,861 - +1.4
2,506,982 - +1.4
2,506,995 + +0.6
2,506,995 + +0.5
2,507,014 + Dsui_2355 0.11 -1.2
2,507,121 - Dsui_2355 0.31 -0.4
2,507,282 + Dsui_2355 0.60 -0.5
2,507,282 + Dsui_2355 0.60 +1.3
2,507,318 + Dsui_2355 0.67 -0.4
2,507,349 + +1.4
2,507,363 + Dsui_2355 0.75 +0.3
2,507,371 - +1.4
2,507,489 + -1.0
2,507,522 + +0.8
2,507,528 - +0.8
2,507,617 + +3.0
2,507,861 + +2.0
2,507,909 + +0.1
2,508,118 + +2.4
2,508,148 + +2.4
2,508,159 + +2.4
2,508,169 + +0.8
2,508,292 + +0.4
2,508,466 - +0.8

Or see this region's nucleotide sequence