Strain Fitness in Dechlorosoma suillum PS around Dsui_2323

Experiment: R2A with sodium pyruvate

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDsui_2321 and Dsui_2322 are separated by 45 nucleotidesDsui_2322 and Dsui_2323 are separated by 3 nucleotidesDsui_2323 and Dsui_2324 are separated by 54 nucleotidesDsui_2324 and Dsui_2325 are separated by 70 nucleotides Dsui_2321: Dsui_2321 - site-specific recombinase, at 2,476,071 to 2,478,146 _2321 Dsui_2322: Dsui_2322 - hypothetical protein, at 2,478,192 to 2,478,968 _2322 Dsui_2323: Dsui_2323 - protein of unknown function (DUF1857), at 2,478,972 to 2,479,445 _2323 Dsui_2324: Dsui_2324 - hypothetical protein, at 2,479,500 to 2,479,868 _2324 Dsui_2325: Dsui_2325 - hypothetical protein, at 2,479,939 to 2,480,343 _2325 Position (kb) 2478 2479 2480Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2478.051 kb on - strandat 2478.129 kb on - strandat 2478.247 kb on + strandat 2478.377 kb on + strand, within Dsui_2322at 2478.382 kb on + strand, within Dsui_2322at 2478.415 kb on + strand, within Dsui_2322at 2478.532 kb on - strand, within Dsui_2322at 2478.568 kb on - strand, within Dsui_2322at 2478.574 kb on - strand, within Dsui_2322at 2478.593 kb on + strand, within Dsui_2322at 2478.617 kb on + strand, within Dsui_2322at 2478.625 kb on - strandat 2478.673 kb on + strand, within Dsui_2322at 2478.682 kb on + strand, within Dsui_2322at 2478.724 kb on - strand, within Dsui_2322at 2478.749 kb on - strand, within Dsui_2322at 2478.776 kb on + strand, within Dsui_2322at 2478.837 kb on - strandat 2478.858 kb on + strand, within Dsui_2322at 2478.877 kb on + strand, within Dsui_2322at 2478.909 kb on - strandat 2478.956 kb on + strandat 2478.970 kb on - strandat 2479.043 kb on + strand, within Dsui_2323at 2479.096 kb on + strand, within Dsui_2323at 2479.108 kb on - strandat 2479.170 kb on + strand, within Dsui_2323at 2479.228 kb on + strand, within Dsui_2323at 2479.354 kb on + strand, within Dsui_2323at 2479.374 kb on + strand, within Dsui_2323at 2479.399 kb on + strandat 2479.407 kb on - strandat 2479.435 kb on + strandat 2479.570 kb on - strand, within Dsui_2324at 2479.600 kb on + strand, within Dsui_2324at 2479.673 kb on + strand, within Dsui_2324at 2479.712 kb on + strand, within Dsui_2324at 2479.753 kb on + strand, within Dsui_2324at 2479.795 kb on - strand, within Dsui_2324at 2479.837 kb on + strandat 2479.884 kb on - strandat 2480.024 kb on + strandat 2480.202 kb on - strand, within Dsui_2325at 2480.207 kb on - strand, within Dsui_2325at 2480.238 kb on - strand, within Dsui_2325at 2480.257 kb on - strand, within Dsui_2325at 2480.288 kb on + strandat 2480.296 kb on - strand, within Dsui_2325at 2480.419 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction R2A with sodium pyruvate
remove
2,478,051 - -0.8
2,478,129 - +0.1
2,478,247 + -0.2
2,478,377 + Dsui_2322 0.24 +0.1
2,478,382 + Dsui_2322 0.24 -0.0
2,478,415 + Dsui_2322 0.29 -0.4
2,478,532 - Dsui_2322 0.44 -2.2
2,478,568 - Dsui_2322 0.48 -0.4
2,478,574 - Dsui_2322 0.49 -1.0
2,478,593 + Dsui_2322 0.52 -0.0
2,478,617 + Dsui_2322 0.55 -0.5
2,478,625 - +1.1
2,478,673 + Dsui_2322 0.62 -0.8
2,478,682 + Dsui_2322 0.63 -0.0
2,478,724 - Dsui_2322 0.68 +1.3
2,478,749 - Dsui_2322 0.72 -0.5
2,478,776 + Dsui_2322 0.75 -0.2
2,478,837 - +0.8
2,478,858 + Dsui_2322 0.86 +1.8
2,478,877 + Dsui_2322 0.88 +0.0
2,478,909 - -0.2
2,478,956 + -0.4
2,478,970 - +0.8
2,479,043 + Dsui_2323 0.15 +1.2
2,479,096 + Dsui_2323 0.26 -0.2
2,479,108 - +0.1
2,479,170 + Dsui_2323 0.42 +0.0
2,479,228 + Dsui_2323 0.54 +0.3
2,479,354 + Dsui_2323 0.81 +0.5
2,479,374 + Dsui_2323 0.85 +0.7
2,479,399 + -0.4
2,479,407 - +3.0
2,479,435 + +0.5
2,479,570 - Dsui_2324 0.19 -0.3
2,479,600 + Dsui_2324 0.27 +0.0
2,479,673 + Dsui_2324 0.47 +0.6
2,479,712 + Dsui_2324 0.57 -1.1
2,479,753 + Dsui_2324 0.69 +0.4
2,479,795 - Dsui_2324 0.80 -0.6
2,479,837 + +0.2
2,479,884 - -0.3
2,480,024 + +1.4
2,480,202 - Dsui_2325 0.65 -0.1
2,480,207 - Dsui_2325 0.66 -0.1
2,480,238 - Dsui_2325 0.74 -0.5
2,480,257 - Dsui_2325 0.79 +0.3
2,480,288 + +0.4
2,480,296 - Dsui_2325 0.88 -0.2
2,480,419 - -0.8

Or see this region's nucleotide sequence