Strain Fitness in Dechlorosoma suillum PS around Dsui_2303

Experiment: R2A with sodium pyruvate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2302 and Dsui_2303 are separated by 39 nucleotidesDsui_2303 and Dsui_2304 are separated by 29 nucleotidesDsui_2304 and Dsui_2305 overlap by 1 nucleotides Dsui_2302: Dsui_2302 - acyl-CoA dehydrogenase, at 2,458,532 to 2,460,325 _2302 Dsui_2303: Dsui_2303 - putative membrane protein, at 2,460,365 to 2,461,030 _2303 Dsui_2304: Dsui_2304 - electron transfer flavoprotein, alpha subunit, at 2,461,060 to 2,461,989 _2304 Dsui_2305: Dsui_2305 - electron transfer flavoprotein, beta subunit, at 2,461,989 to 2,462,738 _2305 Position (kb) 2460 2461 2462Strain fitness (log2 ratio) -2 -1 0 1at 2459.383 kb on + strand, within Dsui_2302at 2459.412 kb on - strand, within Dsui_2302at 2459.654 kb on - strand, within Dsui_2302at 2459.712 kb on + strand, within Dsui_2302at 2459.769 kb on + strand, within Dsui_2302at 2459.775 kb on + strand, within Dsui_2302at 2459.844 kb on + strand, within Dsui_2302at 2459.844 kb on - strand, within Dsui_2302at 2459.857 kb on - strand, within Dsui_2302at 2459.947 kb on + strand, within Dsui_2302at 2459.964 kb on + strand, within Dsui_2302at 2460.020 kb on - strand, within Dsui_2302at 2460.039 kb on + strand, within Dsui_2302at 2460.052 kb on - strand, within Dsui_2302at 2460.127 kb on + strand, within Dsui_2302at 2460.184 kb on + strandat 2460.193 kb on - strandat 2460.193 kb on - strandat 2460.232 kb on - strandat 2460.259 kb on + strandat 2460.267 kb on - strandat 2460.267 kb on - strandat 2460.322 kb on - strandat 2460.342 kb on + strandat 2460.407 kb on - strandat 2460.424 kb on + strandat 2460.636 kb on - strand, within Dsui_2303at 2460.687 kb on + strand, within Dsui_2303at 2460.687 kb on + strand, within Dsui_2303at 2460.776 kb on + strand, within Dsui_2303at 2460.781 kb on + strand, within Dsui_2303at 2460.908 kb on - strand, within Dsui_2303at 2460.992 kb on + strandat 2461.000 kb on - strandat 2461.000 kb on - strandat 2461.005 kb on - strandat 2461.057 kb on + strandat 2461.177 kb on - strand, within Dsui_2304at 2461.384 kb on + strand, within Dsui_2304at 2461.454 kb on - strand, within Dsui_2304at 2461.503 kb on - strand, within Dsui_2304at 2461.561 kb on - strand, within Dsui_2304at 2461.588 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with sodium pyruvate
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2,459,383 + Dsui_2302 0.47 +0.2
2,459,412 - Dsui_2302 0.49 +0.2
2,459,654 - Dsui_2302 0.63 +1.4
2,459,712 + Dsui_2302 0.66 -0.0
2,459,769 + Dsui_2302 0.69 +1.2
2,459,775 + Dsui_2302 0.69 -0.4
2,459,844 + Dsui_2302 0.73 -0.3
2,459,844 - Dsui_2302 0.73 -0.5
2,459,857 - Dsui_2302 0.74 -0.5
2,459,947 + Dsui_2302 0.79 -0.2
2,459,964 + Dsui_2302 0.80 -1.1
2,460,020 - Dsui_2302 0.83 -0.5
2,460,039 + Dsui_2302 0.84 -0.8
2,460,052 - Dsui_2302 0.85 -0.2
2,460,127 + Dsui_2302 0.89 -1.2
2,460,184 + +0.2
2,460,193 - -0.2
2,460,193 - +0.4
2,460,232 - +0.3
2,460,259 + -0.2
2,460,267 - -0.3
2,460,267 - -0.4
2,460,322 - -0.2
2,460,342 + +0.8
2,460,407 - -0.3
2,460,424 + -0.3
2,460,636 - Dsui_2303 0.41 -0.5
2,460,687 + Dsui_2303 0.48 -0.8
2,460,687 + Dsui_2303 0.48 +0.1
2,460,776 + Dsui_2303 0.62 -0.8
2,460,781 + Dsui_2303 0.62 -2.7
2,460,908 - Dsui_2303 0.82 +0.2
2,460,992 + -0.5
2,461,000 - -0.1
2,461,000 - -0.8
2,461,005 - +0.3
2,461,057 + +0.2
2,461,177 - Dsui_2304 0.13 +0.1
2,461,384 + Dsui_2304 0.35 +0.4
2,461,454 - Dsui_2304 0.42 -0.3
2,461,503 - Dsui_2304 0.48 -1.3
2,461,561 - Dsui_2304 0.54 -0.8
2,461,588 + +0.1

Or see this region's nucleotide sequence