Strain Fitness in Dechlorosoma suillum PS around Dsui_2271

Experiment: R2A with sodium pyruvate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2269 and Dsui_2270 are separated by 280 nucleotidesDsui_2270 and Dsui_2271 are separated by 54 nucleotidesDsui_2271 and Dsui_2272 are separated by 215 nucleotides Dsui_2269: Dsui_2269 - SOS regulatory protein LexA, at 2,420,598 to 2,421,209 _2269 Dsui_2270: Dsui_2270 - hypothetical protein, at 2,421,490 to 2,421,693 _2270 Dsui_2271: Dsui_2271 - hypothetical protein, at 2,421,748 to 2,422,731 _2271 Dsui_2272: Dsui_2272 - hypothetical protein, at 2,422,947 to 2,424,431 _2272 Position (kb) 2421 2422 2423Strain fitness (log2 ratio) -1 0 1 2 3at 2420.959 kb on - strand, within Dsui_2269at 2421.207 kb on - strandat 2421.440 kb on + strandat 2421.487 kb on + strandat 2421.605 kb on - strand, within Dsui_2270at 2421.618 kb on - strandat 2421.902 kb on - strand, within Dsui_2271at 2422.011 kb on + strandat 2422.050 kb on + strand, within Dsui_2271at 2422.066 kb on - strand, within Dsui_2271at 2422.133 kb on - strand, within Dsui_2271at 2422.287 kb on + strand, within Dsui_2271at 2422.302 kb on + strand, within Dsui_2271at 2422.310 kb on - strand, within Dsui_2271at 2422.339 kb on + strandat 2422.417 kb on + strandat 2422.453 kb on - strand, within Dsui_2271at 2422.559 kb on - strand, within Dsui_2271at 2422.574 kb on + strandat 2422.611 kb on + strandat 2422.637 kb on + strandat 2422.730 kb on - strandat 2422.741 kb on + strandat 2422.776 kb on + strandat 2422.950 kb on + strandat 2423.020 kb on - strandat 2423.159 kb on + strandat 2423.167 kb on - strand, within Dsui_2272at 2423.173 kb on - strandat 2423.244 kb on - strand, within Dsui_2272at 2423.263 kb on - strand, within Dsui_2272at 2423.279 kb on - strand, within Dsui_2272at 2423.561 kb on + strandat 2423.651 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with sodium pyruvate
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2,420,959 - Dsui_2269 0.59 -0.0
2,421,207 - -1.2
2,421,440 + +1.4
2,421,487 + +2.4
2,421,605 - Dsui_2270 0.56 +0.6
2,421,618 - +0.8
2,421,902 - Dsui_2271 0.16 -1.0
2,422,011 + +1.4
2,422,050 + Dsui_2271 0.31 -0.0
2,422,066 - Dsui_2271 0.32 -0.3
2,422,133 - Dsui_2271 0.39 +2.4
2,422,287 + Dsui_2271 0.55 -0.1
2,422,302 + Dsui_2271 0.56 -1.1
2,422,310 - Dsui_2271 0.57 -1.3
2,422,339 + +0.4
2,422,417 + +1.1
2,422,453 - Dsui_2271 0.72 -0.1
2,422,559 - Dsui_2271 0.82 +0.8
2,422,574 + +2.4
2,422,611 + +2.4
2,422,637 + -1.2
2,422,730 - +0.7
2,422,741 + +0.1
2,422,776 + +1.4
2,422,950 + +1.4
2,423,020 - -0.4
2,423,159 + +0.8
2,423,167 - Dsui_2272 0.15 +0.5
2,423,173 - +0.8
2,423,244 - Dsui_2272 0.20 +0.2
2,423,263 - Dsui_2272 0.21 -1.5
2,423,279 - Dsui_2272 0.22 +1.1
2,423,561 + +0.1
2,423,651 + +3.4

Or see this region's nucleotide sequence